Analysis of interatomic Contacts of Structural Units in PDB entry:
5VR6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5VR6 entry

There are 2 chains in PDB entry 5VR6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 373LEU 636
B
 ARG 373GLU 638
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 5VR6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
383 389Right-handed alpha
Helix 2
AA2
A
391 397Right-handed alpha
Helix 3
AA3
A
420 427Right-handed 310
Helix 4
AA4
A
431 448Right-handed alpha
Helix 5
AA5
A
460 475Right-handed alpha
Helix 6
AA6
A
486 489Right-handed 310
Helix 7
AA7
A
491 495Right-handed 310
Helix 8
AA8
A
505 512Right-handed alpha
Helix 9
AA9
A
525 529Right-handed 310
Helix 10
AB1
A
534 554Right-handed alpha
Helix 11
AB2
A
567 572Right-handed alpha
Helix 12
AB3
A
574 578Right-handed 310
Helix 13
AB4
A
583 592Right-handed alpha
Helix 14
AB5
A
630 635Right-handed alpha
Helix 15
AB6
B
383 389Right-handed alpha
Helix 16
AB7
B
392 397Right-handed alpha
Helix 17
AB8
B
420 427Right-handed 310
Helix 18
AB9
B
431 448Right-handed alpha
Helix 19
AC1
B
460 475Right-handed alpha
Helix 20
AC2
B
486 489Right-handed 310
Helix 21
AC3
B
491 495Right-handed 310
Helix 22
AC4
B
505 512Right-handed alpha
Helix 23
AC5
B
525 529Right-handed 310
Helix 24
AC6
B
534 554Right-handed alpha
Helix 25
AC7
B
567 574Right-handed alpha
Helix 26
AC8
B
583 592Right-handed alpha
Helix 27
AC9
B
630 635Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5VR6. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 484first strand
Strand 2
A
454 457parallel
Strand 3
A
559 564parallel
Strand 4
A
374 379parallel
Strand 5
A
599 604anti-parallel
Strand 6
A
611 614anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
483 484first strand
Strand 2
B
454 457parallel
Strand 3
B
559 564parallel
Strand 4
B
374 379parallel
Strand 5
B
599 604anti-parallel
Strand 6
B
611 614anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il