Analysis of interatomic Contacts of Structural Units in PDB entry:
5W30


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W30 entry

There is 1 chain in PDB entry 5W30 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 21GLU 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 5W30. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
27 31Right-handed 310
Helix 2
AA2
A
81 90Right-handed alpha
Helix 3
AA3
A
162 165Right-handed 310
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There are 2 sheets in PDB entry 5W30. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 49first strand
Strand 2
A
77 78anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
52 58first strand
Strand 2
A
65 73anti-parallel
Strand 3
A
101 111anti-parallel
Strand 4
A
116 125anti-parallel
Strand 5
A
128 143anti-parallel
Strand 6
A
149 160anti-parallel
Strand 7
A
178 188anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il