Analysis of interatomic Contacts of Structural Units in PDB entry:
5W3R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W3R entry

There is 1 chain in PDB entry 5W3R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 515SER 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5W3R. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
521 525Right-handed 310
Helix 2
AA2
A
533 543Right-handed alpha
Helix 3
AA3
A
544 549Right-handed 310
Helix 4
AA4
A
596 607Right-handed alpha
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There are 2 sheets in PDB entry 5W3R. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
528 531first strand
Strand 2
A
551 556parallel
Strand 3
A
564 570anti-parallel
Strand 4
A
573 581anti-parallel
Strand 5
A
587 589anti-parallel
Strand 6
A
592 594anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
528 531first strand
Strand 2
A
551 556parallel
Strand 3
A
623 624parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il