Analysis of interatomic Contacts of Structural Units in PDB entry:
5W3W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W3W entry

There are 8 chains in PDB entry 5W3W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 136
A
 ILE 138SER 314
B
 MET 1VAL 136
B
 ILE 138SER 314
C
 MET 1VAL 136
C
 ILE 138SER 314
D
 MET 1VAL 136
D
 ILE 138SER 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 5W3W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 36Right-handed alpha
Helix 2
AA2
A
37 40Right-handed 310
Helix 3
AA3
A
43 58Right-handed alpha
Helix 4
AA4
A
75 84Right-handed alpha
Helix 5
AA5
A
103 107Right-handed 310
Helix 6
AA6
A
110 124Right-handed alpha
Helix 7
AA7
A
146 164Right-handed alpha
Helix 8
AA8
A
176 188Right-handed alpha
Helix 9
AA9
A
191 193Right-handed 310
Helix 10
AB1
A
199 203Right-handed 310
Helix 11
AB2
A
205 215Right-handed alpha
Helix 12
AB3
A
231 244Right-handed alpha
Helix 13
AB4
A
247 249Right-handed 310
Helix 14
AB5
A
281 286Right-handed alpha
Helix 15
AB6
A
286 294Right-handed alpha
Helix 16
AB7
A
297 306Right-handed alpha
Helix 17
AB8
A
306 313Right-handed alpha
Helix 18
AB9
B
29 36Right-handed alpha
Helix 19
AC1
B
37 40Right-handed 310
Helix 20
AC2
B
41 59Right-handed alpha
Helix 21
AC3
B
75 84Right-handed alpha
Helix 22
AC4
B
103 107Right-handed 310
Helix 23
AC5
B
110 124Right-handed alpha
Helix 24
AC6
B
146 164Right-handed alpha
Helix 25
AC7
B
176 188Right-handed alpha
Helix 26
AC8
B
191 193Right-handed 310
Helix 27
AC9
B
205 215Right-handed alpha
Helix 28
AD1
B
233 245Right-handed alpha
Helix 29
AD2
B
247 249Right-handed 310
Helix 30
AD3
B
281 286Right-handed alpha
Helix 31
AD4
B
286 294Right-handed alpha
Helix 32
AD5
B
297 306Right-handed alpha
Helix 33
AD6
B
306 313Right-handed alpha
Helix 34
AD7
C
29 36Right-handed alpha
Helix 35
AD8
C
37 40Right-handed 310
Helix 36
AD9
C
41 59Right-handed alpha
Helix 37
AE1
C
75 87Right-handed alpha
Helix 38
AE2
C
103 107Right-handed 310
Helix 39
AE3
C
110 124Right-handed alpha
Helix 40
AE4
C
146 164Right-handed alpha
Helix 41
AE5
C
176 188Right-handed alpha
Helix 42
AE6
C
191 193Right-handed 310
Helix 43
AE7
C
199 203Right-handed 310
Helix 44
AE8
C
205 215Right-handed alpha
Helix 45
AE9
C
231 244Right-handed alpha
Helix 46
AF1
C
245 246Right-handed 310
Helix 47
AF2
C
247 249Right-handed 310
Helix 48
AF3
C
281 286Right-handed alpha
Helix 49
AF4
C
286 291Right-handed alpha
Helix 50
AF5
C
297 306Right-handed alpha
Helix 51
AF6
C
307 313Right-handed alpha
Helix 52
AF7
D
12 16Right-handed 310
Helix 53
AF8
D
29 36Right-handed alpha
Helix 54
AF9
D
37 40Right-handed 310
Helix 55
AG1
D
41 59Right-handed alpha
Helix 56
AG2
D
75 85Right-handed alpha
Helix 57
AG3
D
103 107Right-handed 310
Helix 58
AG4
D
110 124Right-handed alpha
Helix 59
AG5
D
146 164Right-handed alpha
Helix 60
AG6
D
176 188Right-handed alpha
Helix 61
AG7
D
191 193Right-handed 310
Helix 62
AG8
D
199 203Right-handed 310
Helix 63
AG9
D
205 215Right-handed alpha
Helix 64
AH1
D
231 245Right-handed alpha
Helix 65
AH2
D
281 286Right-handed alpha
Helix 66
AH3
D
286 294Right-handed alpha
Helix 67
AH4
D
297 306Right-handed alpha
Helix 68
AH5
D
306 313Right-handed alpha
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There are 11 sheets in PDB entry 5W3W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
63 65parallel
Strand 3
A
89 91parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 95first strand
Strand 2
A
136 139parallel
Strand 3
A
167 170parallel
Strand 4
A
195 197parallel
Strand 5
A
218 221parallel
Strand 6
A
251 253parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
8 11anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
63 66parallel
Strand 3
B
89 92parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
136 138parallel
Strand 3
B
167 170parallel
Strand 4
B
195 198parallel
Strand 5
B
218 221parallel
Strand 6
B
251 253parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
8 11anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 20first strand
Strand 2
C
63 66parallel
Strand 3
C
89 92parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
94 95first strand
Strand 2
C
136 138parallel
Strand 3
C
167 170parallel
Strand 4
C
195 198parallel
Strand 5
C
218 221parallel
Strand 6
C
251 253parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
8 11anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 20first strand
Strand 2
D
63 66parallel
Strand 3
D
89 92parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 95first strand
Strand 2
D
136 138parallel
Strand 3
D
167 169parallel
Strand 4
D
195 197parallel
Strand 5
D
218 221parallel
Strand 6
D
251 253parallel
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