Analysis of interatomic Contacts of Structural Units in PDB entry:
5W4A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W4A entry

There are 3 chains in PDB entry 5W4A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASN 4GLY 215
B
MSE 1GLY 215
C
MSE 1LEU 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 5W4A. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
19 29Right-handed alpha
Helix 2
AA2
A
29 36Right-handed alpha
Helix 3
AA3
A
37 40Right-handed 310
Helix 4
AA4
A
41 48Right-handed alpha
Helix 5
AA5
A
56 65Right-handed alpha
Helix 6
AA6
A
70 85Right-handed alpha
Helix 7
AA7
A
88 101Right-handed alpha
Helix 8
AA8
A
108 113Right-handed 310
Helix 9
AA9
A
115 132Right-handed alpha
Helix 10
AB1
A
135 149Right-handed alpha
Helix 11
AB2
A
152 162Right-handed alpha
Helix 12
AB3
A
163 167Right-handed 310
Helix 13
AB4
A
168 180Right-handed alpha
Helix 14
AB5
A
186 202Right-handed alpha
Helix 15
AB6
A
205 215Right-handed alpha
Helix 16
AB7
B
19 29Right-handed alpha
Helix 17
AB8
B
29 36Right-handed alpha
Helix 18
AB9
B
37 40Right-handed 310
Helix 19
AC1
B
41 48Right-handed alpha
Helix 20
AC2
B
56 65Right-handed alpha
Helix 21
AC3
B
70 85Right-handed alpha
Helix 22
AC4
B
88 101Right-handed alpha
Helix 23
AC5
B
109 114Right-handed alpha
Helix 24
AC6
B
115 132Right-handed alpha
Helix 25
AC7
B
135 149Right-handed alpha
Helix 26
AC8
B
152 161Right-handed alpha
Helix 27
AC9
B
162 167Right-handed 310
Helix 28
AD1
B
168 180Right-handed alpha
Helix 29
AD2
B
186 202Right-handed alpha
Helix 30
AD3
B
205 214Right-handed alpha
Helix 31
AD4
C
19 29Right-handed alpha
Helix 32
AD5
C
29 36Right-handed alpha
Helix 33
AD6
C
37 40Right-handed 310
Helix 34
AD7
C
41 48Right-handed alpha
Helix 35
AD8
C
56 65Right-handed alpha
Helix 36
AD9
C
70 85Right-handed alpha
Helix 37
AE1
C
88 101Right-handed alpha
Helix 38
AE2
C
116 132Right-handed alpha
Helix 39
AE3
C
135 149Right-handed alpha
Helix 40
AE4
C
152 161Right-handed alpha
Helix 41
AE5
C
162 167Right-handed 310
Helix 42
AE6
C
168 180Right-handed alpha
Helix 43
AE7
C
186 202Right-handed alpha
Helix 44
AE8
C
205 214Right-handed alpha
Helix 45
AE9
D
19 29Right-handed alpha
Helix 46
AF1
D
29 36Right-handed alpha
Helix 47
AF2
D
37 40Right-handed 310
Helix 48
AF3
D
41 48Right-handed alpha
Helix 49
AF4
D
56 65Right-handed alpha
Helix 50
AF5
D
70 85Right-handed alpha
Helix 51
AF6
D
88 101Right-handed alpha
Helix 52
AF7
D
108 113Right-handed 310
Helix 53
AF8
D
115 132Right-handed alpha
Helix 54
AF9
D
135 149Right-handed alpha
Helix 55
AG1
D
152 162Right-handed alpha
Helix 56
AG2
D
163 167Right-handed 310
Helix 57
AG3
D
168 180Right-handed alpha
Helix 58
AG4
D
186 202Right-handed alpha
Helix 59
AG5
D
205 215Right-handed alpha
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There are 4 sheets in PDB entry 5W4A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
9 11first strand
Strand 2
A
14 16anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
9 11first strand
Strand 2
B
14 16anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
9 11first strand
Strand 2
C
14 16anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
9 11first strand
Strand 2
D
14 16anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il