Analysis of interatomic Contacts of Structural Units in PDB entry:
5W97


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W97 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 28 chains in PDB entry 5W97 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 2LYS 514
B
ALA 2LEU 227
C
HIS 3SER 261
D
SER 4LYS 147
E
HIS 5VAL 109
F
ALA 1HIS 98
G
ALA 1GLY 10
G
GLY 12LYS 84
H
LYS 7ILE 85
I
THR 2LYS 73
J
PHE 1LYS 58
K
ALA 6ARG 54
L
HIS 2LYS 47
M
ILE 1SER 43
a
PHE 2LYS 514
b
ALA 2LEU 227
c
HIS 3SER 261
d
SER 4LYS 147
e
HIS 5VAL 109
f
ALA 1HIS 98
g
ALA 1GLY 10
g
GLY 12LYS 84
h
LYS 7ILE 85
i
THR 2LYS 73
j
PHE 1LYS 58
k
ALA 6ARG 54
l
HIS 2LYS 47
m
ILE 1SER 43
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are140 helices in PDB entry 5W97. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
1 7Right-handed alpha
Helix 2
AA2
A
11 42Right-handed alpha
Helix 3
AA3
A
50 68Right-handed alpha
Helix 4
AA4
A
69 75Right-handed alpha
Helix 5
AA5
A
76 88Right-handed alpha
Helix 6
AA6
A
94 104Right-handed alpha
Helix 7
AA7
A
104 118Right-handed alpha
Helix 8
AA8
A
141 171Right-handed alpha
Helix 9
AA9
A
177 181Right-handed 310
Helix 10
AB1
A
182 215Right-handed alpha
Helix 11
AB2
A
221 225Right-handed 310
Helix 12
AB3
A
227 262Right-handed alpha
Helix 13
AB4
A
269 284Right-handed alpha
Helix 14
AB5
A
285 286Right-handed 310
Helix 15
AB6
A
287 292Right-handed 310
Helix 16
AB7
A
298 312Right-handed alpha
Helix 17
AB8
A
312 328Right-handed alpha
Helix 18
AB9
A
335 359Right-handed alpha
Helix 19
AC1
A
360 368Right-handed alpha
Helix 20
AC2
A
370 383Right-handed alpha
Helix 21
AC3
A
384 402Right-handed alpha
Helix 22
AC4
A
406 426Right-handed alpha
Helix 23
AC5
A
427 434Right-handed alpha
Helix 24
AC6
A
444 446Right-handed 310
Helix 25
AC7
A
447 479Right-handed alpha
Helix 26
AC8
A
487 495Right-handed 310
Helix 27
AC9
B
14 46Right-handed alpha
Helix 28
AD1
B
60 87Right-handed alpha
Helix 29
AD2
B
166 169Right-handed 310
Helix 30
AD3
B
203 207Right-handed 310
Helix 31
AD4
B
215 226Right-handed alpha
Helix 32
AD5
C
15 37Right-handed alpha
Helix 33
AD6
C
40 66Right-handed alpha
Helix 34
AD7
C
72 106Right-handed alpha
Helix 35
AD8
C
109 113Right-handed 310
Helix 36
AD9
C
128 153Right-handed alpha
Helix 37
AE1
C
155 184Right-handed alpha
Helix 38
AE2
C
190 224Right-handed alpha
Helix 39
AE3
C
232 256Right-handed alpha
Helix 40
AE4
D
7 11Right-handed 310
Helix 41
AE5
D
34 44Right-handed alpha
Helix 42
AE6
D
47 51Right-handed 310
Helix 43
AE7
D
52 64Right-handed alpha
Helix 44
AE8
D
67 72Right-handed alpha
Helix 45
AE9
D
76 103Right-handed alpha
Helix 46
AF1
D
108 111Right-handed 310
Helix 47
AF2
D
112 126Right-handed alpha
Helix 48
AF3
D
134 136Right-handed 310
Helix 49
AF4
E
7 21Right-handed alpha
Helix 50
AF5
E
25 37Right-handed alpha
Helix 51
AF6
E
44 58Right-handed alpha
Helix 52
AF7
E
60 76Right-handed alpha
Helix 53
AF8
E
80 97Right-handed alpha
Helix 54
AF9
F
8 13Right-handed alpha
Helix 55
AG1
F
14 26Right-handed alpha
Helix 56
AG2
G
12 23Right-handed alpha
Helix 57
AG3
G
23 38Right-handed alpha
Helix 58
AG4
H
25 47Right-handed alpha
Helix 59
AG5
H
49 52Right-handed 310
Helix 60
AG6
H
53 64Right-handed alpha
Helix 61
AG7
H
65 79Right-handed alpha
Helix 62
AG8
I
11 39Right-handed alpha
Helix 63
AG9
I
39 53Right-handed alpha
Helix 64
AH1
I
55 67Right-handed alpha
Helix 65
AH2
J
4 13Right-handed alpha
Helix 66
AH3
J
25 54Right-handed alpha
Helix 67
AH4
K
8 36Right-handed alpha
Helix 68
AH5
K
43 47Right-handed 310
Helix 69
AH6
L
17 47Right-handed alpha
Helix 70
AH7
M
11 36Right-handed alpha
Helix 71
AH8
M
36 41Right-handed alpha
Helix 72
AH9
a
2 7Right-handed alpha
Helix 73
AI1
a
11 42Right-handed alpha
Helix 74
AI2
a
50 69Right-handed alpha
Helix 75
AI3
a
69 75Right-handed alpha
Helix 76
AI4
a
76 88Right-handed alpha
Helix 77
AI5
a
94 104Right-handed alpha
Helix 78
AI6
a
104 118Right-handed alpha
Helix 79
AI7
a
140 171Right-handed alpha
Helix 80
AI8
a
177 181Right-handed 310
Helix 81
AI9
a
182 215Right-handed alpha
Helix 82
AJ1
a
221 225Right-handed 310
Helix 83
AJ2
a
227 261Right-handed alpha
Helix 84
AJ3
a
269 284Right-handed alpha
Helix 85
AJ4
a
285 286Right-handed 310
Helix 86
AJ5
a
287 292Right-handed 310
Helix 87
AJ6
a
298 312Right-handed alpha
Helix 88
AJ7
a
312 328Right-handed alpha
Helix 89
AJ8
a
335 360Right-handed alpha
Helix 90
AJ9
a
360 368Right-handed alpha
Helix 91
AK1
a
370 383Right-handed alpha
Helix 92
AK2
a
384 402Right-handed alpha
Helix 93
AK3
a
406 426Right-handed alpha
Helix 94
AK4
a
427 435Right-handed alpha
Helix 95
AK5
a
444 446Right-handed 310
Helix 96
AK6
a
447 479Right-handed alpha
Helix 97
AK7
a
487 495Right-handed 310
Helix 98
AK8
b
14 47Right-handed alpha
Helix 99
AK9
b
58 89Right-handed alpha
Helix 100
AL1
b
166 169Right-handed 310
Helix 101
AL2
b
203 206Right-handed 310
Helix 102
AL3
b
215 226Right-handed alpha
Helix 103
AL4
c
15 37Right-handed alpha
Helix 104
AL5
c
40 66Right-handed alpha
Helix 105
AL6
c
72 107Right-handed alpha
Helix 106
AL7
c
109 113Right-handed 310
Helix 107
AL8
c
128 153Right-handed alpha
Helix 108
AL9
c
155 184Right-handed alpha
Helix 109
AM1
c
190 224Right-handed alpha
Helix 110
AM2
c
232 256Right-handed alpha
Helix 111
AM3
d
34 44Right-handed alpha
Helix 112
AM4
d
45 46Right-handed 310
Helix 113
AM5
d
47 51Right-handed 310
Helix 114
AM6
d
52 64Right-handed alpha
Helix 115
AM7
d
67 72Right-handed alpha
Helix 116
AM8
d
76 103Right-handed alpha
Helix 117
AM9
d
112 126Right-handed alpha
Helix 118
AN1
d
134 136Right-handed 310
Helix 119
AN2
e
7 21Right-handed alpha
Helix 120
AN3
e
25 37Right-handed alpha
Helix 121
AN4
e
44 58Right-handed alpha
Helix 122
AN5
e
60 76Right-handed alpha
Helix 123
AN6
e
80 97Right-handed alpha
Helix 124
AN7
f
8 13Right-handed alpha
Helix 125
AN8
f
14 26Right-handed alpha
Helix 126
AN9
g
12 23Right-handed alpha
Helix 127
AO1
g
23 37Right-handed alpha
Helix 128
AO2
h
25 47Right-handed alpha
Helix 129
AO3
h
49 52Right-handed 310
Helix 130
AO4
h
53 64Right-handed alpha
Helix 131
AO5
h
65 79Right-handed alpha
Helix 132
AO6
i
11 39Right-handed alpha
Helix 133
AO7
i
39 51Right-handed alpha
Helix 134
AO8
i
55 66Right-handed alpha
Helix 135
AO9
j
4 13Right-handed alpha
Helix 136
AP1
j
19 23Right-handed 310
Helix 137
AP2
j
25 55Right-handed alpha
Helix 138
AP3
k
8 35Right-handed alpha
Helix 139
AP4
l
17 47Right-handed alpha
Helix 140
AP5
m
11 36Right-handed alpha
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There are 14 sheets in PDB entry 5W97. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
482 484first strand
Strand 2
M
2 3anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
510 511first strand
Strand 2
F
55 60parallel
Strand 3
F
70 75anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
116 120first strand
Strand 2
B
105 110anti-parallel
Strand 3
B
95 102anti-parallel
Strand 4
B
149 156parallel
Strand 5
B
180 185anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
142 145first strand
Strand 2
B
209 214parallel
Strand 3
B
190 194anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
161 165first strand
Strand 2
B
170 174anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
138 139first strand
Strand 2
D
144 145anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
47 50first strand
Strand 2
F
88 92parallel
Strand 3
F
80 81anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
482 484first strand
Strand 2
m
2 3anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
510 511first strand
Strand 2
f
55 60parallel
Strand 3
f
70 75anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
b
116 120first strand
Strand 2
b
105 110anti-parallel
Strand 3
b
95 102anti-parallel
Strand 4
b
150 156parallel
Strand 5
b
180 184anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
b
142 145first strand
Strand 2
b
208 214parallel
Strand 3
b
190 195anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
b
161 165first strand
Strand 2
b
170 174anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
d
138 139first strand
Strand 2
d
144 145anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
f
47 50first strand
Strand 2
f
88 92parallel
Strand 3
f
80 81anti-parallel
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