Analysis of interatomic Contacts of Structural Units in PDB entry:
5WAI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WAI entry

There are 6 chains in PDB entry 5WAI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	GLU 412
B	VAL 79	TRP 546
C	PHE 413	ARG 503
D	ARG 150	ARG 164
E	LYS 4	GLU 412
F	HIS 78	TYR 117

There are 36 helices in PDB entry 5WAI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	28	Right-handed alpha
Helix 2	AA2	A	155	157	Right-handed 310
Helix 3	AA3	A	348	350	Right-handed 310
Helix 4	AA4	A	355	362	Right-handed alpha
Helix 5	AA5	A	405	410	Right-handed alpha
Helix 6	AA6	B	80	107	Right-handed alpha
Helix 7	AA7	B	111	122	Right-handed 310
Helix 8	AA8	B	127	132	Right-handed 310
Helix 9	AA9	B	133	135	Right-handed 310
Helix 10	AB1	B	136	147	Right-handed alpha
Helix 11	AB2	B	240	243	Right-handed 310
Helix 12	AB3	B	459	471	Right-handed alpha
Helix 13	AB4	B	540	544	Right-handed 310
Helix 14	AB5	C	414	421	Right-handed alpha
Helix 15	AB6	C	465	468	Right-handed 310
Helix 16	AB7	C	478	480	Right-handed 310
Helix 17	AB8	C	481	486	Right-handed alpha
Helix 18	AB9	C	487	489	Right-handed 310
Helix 19	AC1	D	153	163	Right-handed alpha
Helix 20	AC2	E	5	27	Right-handed alpha
Helix 21	AC3	E	28	30	Right-handed 310
Helix 22	AC4	E	155	157	Right-handed 310
Helix 23	AC5	E	348	350	Right-handed 310
Helix 24	AC6	E	355	362	Right-handed alpha
Helix 25	AC7	E	405	410	Right-handed alpha
Helix 26	AC8	F	79	107	Right-handed alpha
Helix 27	AC9	F	111	122	Right-handed 310
Helix 28	AD1	F	126	131	Right-handed 310
Helix 29	AD2	F	133	135	Right-handed 310
Helix 30	AD3	F	136	147	Right-handed alpha
Helix 31	AD4	F	238	242	Right-handed 310
Helix 32	AD5	F	459	471	Right-handed alpha
Helix 33	AD6	G	478	480	Right-handed 310
Helix 34	AD7	G	481	486	Right-handed alpha
Helix 35	AD8	G	487	489	Right-handed 310
Helix 36	AD9	H	153	163	Right-handed alpha

There are 22 sheets in PDB entry 5WAI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	B	525	531	anti-parallel
Strand 3	A	32	39	anti-parallel
Strand 4	A	398	404	anti-parallel
Strand 5	A	390	394	anti-parallel
Strand 6	A	377	382	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	61	69	anti-parallel
Strand 3	A	77	87	anti-parallel
Strand 4	A	115	123	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	133	first strand
Strand 2	A	136	143	anti-parallel
Strand 3	A	149	153	anti-parallel
Strand 4	A	171	173	anti-parallel
Strand 5	A	216	217	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	192	196	anti-parallel
Strand 3	A	202	206	anti-parallel
Strand 4	A	221	223	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	235	first strand
Strand 2	A	242	247	anti-parallel
Strand 3	A	251	256	anti-parallel
Strand 4	A	267	270	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	281	first strand
Strand 2	A	288	293	anti-parallel
Strand 3	A	297	302	anti-parallel
Strand 4	A	311	314	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	320	325	first strand
Strand 2	A	332	337	anti-parallel
Strand 3	A	342	346	anti-parallel
Strand 4	A	366	370	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	233	first strand
Strand 2	B	156	165	anti-parallel
Strand 3	B	354	362	anti-parallel
Strand 4	B	313	318	anti-parallel
Strand 5	C	427	440	anti-parallel
Strand 6	C	445	452	anti-parallel
Strand 7	C	460	463	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	233	first strand
Strand 2	B	156	165	anti-parallel
Strand 3	B	354	362	anti-parallel
Strand 4	B	313	318	anti-parallel
Strand 5	C	427	440	anti-parallel
Strand 6	C	472	476	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	207	first strand
Strand 2	B	185	192	anti-parallel
Strand 3	B	245	253	anti-parallel
Strand 4	B	297	302	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	443	first strand
Strand 2	B	427	434	anti-parallel
Strand 3	B	484	491	parallel
Strand 4	B	474	481	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	377	382	first strand
Strand 2	E	389	394	anti-parallel
Strand 3	E	398	404	anti-parallel
Strand 4	E	32	39	anti-parallel
Strand 5	F	526	531	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	49	first strand
Strand 2	E	61	68	anti-parallel
Strand 3	E	77	87	anti-parallel
Strand 4	E	115	123	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	133	first strand
Strand 2	E	136	143	anti-parallel
Strand 3	E	149	153	anti-parallel
Strand 4	E	171	173	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	185	first strand
Strand 2	E	192	196	anti-parallel
Strand 3	E	202	206	anti-parallel
Strand 4	E	221	223	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	235	first strand
Strand 2	E	242	247	anti-parallel
Strand 3	E	251	256	anti-parallel
Strand 4	E	267	270	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	276	281	first strand
Strand 2	E	288	293	anti-parallel
Strand 3	E	297	302	anti-parallel
Strand 4	E	311	314	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	320	325	first strand
Strand 2	E	332	337	anti-parallel
Strand 3	E	342	346	anti-parallel
Strand 4	E	366	370	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	229	234	first strand
Strand 2	F	156	165	anti-parallel
Strand 3	F	354	362	anti-parallel
Strand 4	F	313	318	anti-parallel
Strand 5	G	427	440	anti-parallel
Strand 6	G	445	452	anti-parallel
Strand 7	G	460	463	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	229	234	first strand
Strand 2	F	156	165	anti-parallel
Strand 3	F	354	362	anti-parallel
Strand 4	F	313	318	anti-parallel
Strand 5	G	427	440	anti-parallel
Strand 6	G	472	476	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	212	first strand
Strand 2	F	183	192	anti-parallel
Strand 3	F	245	254	anti-parallel
Strand 4	F	295	302	anti-parallel
Strand 5	F	320	321	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	438	443	first strand
Strand 2	F	427	433	anti-parallel
Strand 3	F	484	491	parallel
Strand 4	F	474	479	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WAI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WAI