Analysis of interatomic Contacts of Structural Units in PDB entry:
5WBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WBL entry

There are 2 chains in PDB entry 5WBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 61ASP 1339
T
 GLY 126GLU 133
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5WBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 65Right-handed 310
Helix 2
AA2
A
75 79Right-handed 310
Helix 3
AA3
A
143 161Right-handed alpha
Helix 4
AA4
A
175 190Right-handed alpha
Helix 5
AA5
A
228 235Right-handed alpha
Helix 6
AA6
A
248 258Right-handed alpha
Helix 7
AA7
A
294 302Right-handed alpha
Helix 8
AA8
A
302 315Right-handed alpha
Helix 9
AA9
A
322 326Right-handed 310
Helix 10
AB1
A
338 359Right-handed alpha
Helix 11
AB2
A
360 369Right-handed alpha
Helix 12
AB3
A
371 391Right-handed alpha
Helix 13
AB4
A
409 430Right-handed alpha
Helix 14
AB5
A
439 454Right-handed alpha
Helix 15
AB6
A
464 472Right-handed alpha
Helix 16
AB7
A
477 490Right-handed alpha
Helix 17
AB8
A
492 503Right-handed alpha
Helix 18
AB9
A
504 511Right-handed alpha
Helix 19
AC1
A
512 514Right-handed 310
Helix 20
AC2
A
516 534Right-handed alpha
Helix 21
AC3
A
537 544Right-handed alpha
Helix 22
AC4
A
546 556Right-handed alpha
Helix 23
AC5
A
560 576Right-handed alpha
Helix 24
AC6
A
578 588Right-handed alpha
Helix 25
AC7
A
589 598Right-handed alpha
Helix 26
AC8
A
610 625Right-handed alpha
Helix 27
AC9
A
627 636Right-handed alpha
Helix 28
AD1
A
638 644Right-handed alpha
Helix 29
AD2
A
645 649Right-handed 310
Helix 30
AD3
A
651 665Right-handed alpha
Helix 31
AD4
A
684 699Right-handed alpha
Helix 32
AD5
A
705 723Right-handed alpha
Helix 33
AD6
A
723 735Right-handed alpha
Helix 34
AD7
A
832 845Right-handed alpha
Helix 35
AD8
A
848 863Right-handed alpha
Helix 36
AD9
A
957 961Right-handed 310
Helix 37
AE1
A
965 972Right-handed alpha
Helix 38
AE2
A
986 1009Right-handed alpha
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There are 9 sheets in PDB entry 5WBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 172first strand
Strand 2
A
106 114parallel
Strand 3
A
194 201parallel
Strand 4
A
239 244parallel
Strand 5
A
273 277parallel
Strand 6
A
396 397anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 216first strand
Strand 2
A
223 227anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1015 1023first strand
Strand 2
A
1332 1337anti-parallel
Strand 3
A
1324 1327anti-parallel
Strand 4
A
1314 1317anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1032 1035first strand
Strand 2
A
1041 1045anti-parallel
Strand 3
A
1051 1055anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1075 1081first strand
Strand 2
A
1088 1093anti-parallel
Strand 3
A
1097 1101anti-parallel
Strand 4
A
1112 1117anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1132 1136first strand
Strand 2
A
1141 1145anti-parallel
Strand 3
A
1150 1155anti-parallel
Strand 4
A
1160 1166anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1173 1178first strand
Strand 2
A
1185 1190anti-parallel
Strand 3
A
1195 1199anti-parallel
Strand 4
A
1206 1210anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1231 1232first strand
Strand 2
A
1241 1246anti-parallel
Strand 3
A
1255 1258anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1264 1269first strand
Strand 2
A
1275 1280anti-parallel
Strand 3
A
1284 1289anti-parallel
Strand 4
A
1294 1299anti-parallel
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