Analysis of interatomic Contacts of Structural Units in PDB entry:
5WBU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WBU entry

There are 2 chains in PDB entry 5WBU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 1385	TRP 2549
D	VAL 8	MET 185

There are108 helices in PDB entry 5WBU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	1386	1407	Right-handed alpha
Helix 2	AA2	B	1409	1422	Right-handed alpha
Helix 3	AA3	B	1425	1439	Right-handed alpha
Helix 4	AA4	B	1445	1453	Right-handed alpha
Helix 5	AA5	B	1455	1470	Right-handed alpha
Helix 6	AA6	B	1473	1488	Right-handed alpha
Helix 7	AA7	B	1489	1499	Right-handed alpha
Helix 8	AA8	B	1505	1524	Right-handed alpha
Helix 9	AA9	B	1525	1534	Right-handed alpha
Helix 10	AB1	B	1540	1555	Right-handed alpha
Helix 11	AB2	B	1557	1573	Right-handed alpha
Helix 12	AB3	B	1573	1578	Right-handed alpha
Helix 13	AB4	B	1586	1603	Right-handed alpha
Helix 14	AB5	B	1612	1625	Right-handed alpha
Helix 15	AB6	B	1629	1642	Right-handed alpha
Helix 16	AB7	B	1649	1664	Right-handed alpha
Helix 17	AB8	B	1665	1678	Right-handed alpha
Helix 18	AB9	B	1693	1707	Right-handed alpha
Helix 19	AC1	B	1709	1730	Right-handed alpha
Helix 20	AC2	B	1737	1763	Right-handed alpha
Helix 21	AC3	B	1767	1783	Right-handed alpha
Helix 22	AC4	B	1786	1812	Right-handed alpha
Helix 23	AC5	B	1868	1896	Right-handed alpha
Helix 24	AC6	B	1899	1914	Right-handed alpha
Helix 25	AC7	B	1916	1930	Right-handed alpha
Helix 26	AC8	B	1932	1937	Right-handed 310
Helix 27	AC9	B	1938	1944	Right-handed alpha
Helix 28	AD1	B	1950	1967	Right-handed alpha
Helix 29	AD2	B	1968	1980	Right-handed alpha
Helix 30	AD3	B	1984	2021	Right-handed alpha
Helix 31	AD4	B	2022	2041	Right-handed alpha
Helix 32	AD5	B	2043	2060	Right-handed alpha
Helix 33	AD6	B	2064	2092	Right-handed alpha
Helix 34	AD7	B	2093	2115	Right-handed alpha
Helix 35	AD8	B	2123	2127	Right-handed alpha
Helix 36	AD9	B	2127	2133	Right-handed alpha
Helix 37	AE1	B	2192	2212	Right-handed alpha
Helix 38	AE2	B	2212	2218	Right-handed alpha
Helix 39	AE3	B	2246	2257	Right-handed alpha
Helix 40	AE4	B	2262	2272	Right-handed alpha
Helix 41	AE5	B	2274	2278	Right-handed 310
Helix 42	AE6	B	2279	2293	Right-handed alpha
Helix 43	AE7	B	2297	2307	Right-handed alpha
Helix 44	AE8	B	2309	2335	Right-handed alpha
Helix 45	AE9	B	2363	2368	Right-handed alpha
Helix 46	AF1	B	2380	2387	Right-handed alpha
Helix 47	AF2	B	2394	2410	Right-handed alpha
Helix 48	AF3	B	2410	2423	Right-handed alpha
Helix 49	AF4	B	2424	2436	Right-handed 310
Helix 50	AF5	B	2493	2508	Right-handed alpha
Helix 51	AF6	B	2520	2534	Right-handed alpha
Helix 52	AF7	B	2534	2541	Right-handed alpha
Helix 53	AF8	B	2542	2546	Right-handed 310
Helix 54	AF9	R	213	232	Right-handed alpha
Helix 55	AG1	A	1388	1407	Right-handed alpha
Helix 56	AG2	A	1409	1422	Right-handed alpha
Helix 57	AG3	A	1425	1439	Right-handed alpha
Helix 58	AG4	A	1445	1453	Right-handed alpha
Helix 59	AG5	A	1455	1470	Right-handed alpha
Helix 60	AG6	A	1473	1488	Right-handed alpha
Helix 61	AG7	A	1489	1499	Right-handed alpha
Helix 62	AG8	A	1505	1524	Right-handed alpha
Helix 63	AG9	A	1525	1534	Right-handed alpha
Helix 64	AH1	A	1540	1555	Right-handed alpha
Helix 65	AH2	A	1557	1573	Right-handed alpha
Helix 66	AH3	A	1573	1578	Right-handed alpha
Helix 67	AH4	A	1586	1603	Right-handed alpha
Helix 68	AH5	A	1613	1625	Right-handed alpha
Helix 69	AH6	A	1629	1642	Right-handed alpha
Helix 70	AH7	A	1649	1664	Right-handed alpha
Helix 71	AH8	A	1665	1678	Right-handed alpha
Helix 72	AH9	A	1693	1707	Right-handed alpha
Helix 73	AI1	A	1709	1730	Right-handed alpha
Helix 74	AI2	A	1737	1763	Right-handed alpha
Helix 75	AI3	A	1767	1783	Right-handed alpha
Helix 76	AI4	A	1786	1812	Right-handed alpha
Helix 77	AI5	A	1868	1896	Right-handed alpha
Helix 78	AI6	A	1899	1914	Right-handed alpha
Helix 79	AI7	A	1916	1930	Right-handed alpha
Helix 80	AI8	A	1932	1937	Right-handed 310
Helix 81	AI9	A	1938	1944	Right-handed alpha
Helix 82	AJ1	A	1950	1967	Right-handed alpha
Helix 83	AJ2	A	1968	1980	Right-handed alpha
Helix 84	AJ3	A	1984	2021	Right-handed alpha
Helix 85	AJ4	A	2022	2041	Right-handed alpha
Helix 86	AJ5	A	2043	2060	Right-handed alpha
Helix 87	AJ6	A	2064	2092	Right-handed alpha
Helix 88	AJ7	A	2093	2115	Right-handed alpha
Helix 89	AJ8	A	2123	2127	Right-handed alpha
Helix 90	AJ9	A	2127	2133	Right-handed alpha
Helix 91	AK1	A	2192	2212	Right-handed alpha
Helix 92	AK2	A	2212	2218	Right-handed alpha
Helix 93	AK3	A	2246	2257	Right-handed alpha
Helix 94	AK4	A	2262	2272	Right-handed alpha
Helix 95	AK5	A	2274	2278	Right-handed 310
Helix 96	AK6	A	2279	2293	Right-handed alpha
Helix 97	AK7	A	2297	2306	Right-handed alpha
Helix 98	AK8	A	2309	2335	Right-handed alpha
Helix 99	AK9	A	2363	2368	Right-handed alpha
Helix 100	AL1	A	2380	2387	Right-handed alpha
Helix 101	AL2	A	2394	2410	Right-handed alpha
Helix 102	AL3	A	2410	2423	Right-handed alpha
Helix 103	AL4	A	2424	2436	Right-handed 310
Helix 104	AL5	A	2493	2508	Right-handed alpha
Helix 105	AL6	A	2520	2534	Right-handed alpha
Helix 106	AL7	A	2534	2541	Right-handed alpha
Helix 107	AL8	A	2542	2546	Right-handed 310
Helix 108	AL9	Q	213	232	Right-handed alpha

There are 22 sheets in PDB entry 5WBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2120	2122	first strand
Strand 2	B	2159	2162	anti-parallel
Strand 3	B	2170	2171	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2153	2156	first strand
Strand 2	B	2173	2176	anti-parallel
Strand 3	B	2181	2183	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2227	2229	first strand
Strand 2	B	2235	2237	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2243	2245	first strand
Strand 2	B	2344	2347	anti-parallel
Strand 3	B	2353	2355	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	39	first strand
Strand 2	D	23	27	anti-parallel
Strand 3	D	14	18	anti-parallel
Strand 4	D	317	321	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	50	first strand
Strand 2	D	56	61	anti-parallel
Strand 3	D	65	69	anti-parallel
Strand 4	D	79	81	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	93	first strand
Strand 2	D	99	104	anti-parallel
Strand 3	D	108	113	anti-parallel
Strand 4	D	123	126	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	136	first strand
Strand 2	D	142	147	anti-parallel
Strand 3	D	152	156	anti-parallel
Strand 4	D	162	166	anti-parallel
Strand 5	P	190	191	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	178	first strand
Strand 2	D	184	189	anti-parallel
Strand 3	D	194	199	anti-parallel
Strand 4	D	210	216	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	228	first strand
Strand 2	D	234	239	anti-parallel
Strand 3	D	243	248	anti-parallel
Strand 4	D	254	259	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	278	first strand
Strand 2	D	284	289	anti-parallel
Strand 3	D	293	298	anti-parallel
Strand 4	D	304	309	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2120	2122	first strand
Strand 2	A	2159	2162	anti-parallel
Strand 3	A	2170	2171	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2153	2156	first strand
Strand 2	A	2173	2176	anti-parallel
Strand 3	A	2181	2183	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2227	2229	first strand
Strand 2	A	2235	2237	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2243	2245	first strand
Strand 2	A	2344	2347	anti-parallel
Strand 3	A	2353	2355	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	39	first strand
Strand 2	C	23	27	anti-parallel
Strand 3	C	14	18	anti-parallel
Strand 4	C	317	321	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	50	first strand
Strand 2	C	56	61	anti-parallel
Strand 3	C	65	69	anti-parallel
Strand 4	C	79	80	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	99	104	anti-parallel
Strand 3	C	108	113	anti-parallel
Strand 4	C	123	126	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	136	first strand
Strand 2	C	142	147	anti-parallel
Strand 3	C	152	156	anti-parallel
Strand 4	C	162	166	anti-parallel
Strand 5	O	190	191	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	178	first strand
Strand 2	C	184	189	anti-parallel
Strand 3	C	194	199	anti-parallel
Strand 4	C	210	216	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	228	first strand
Strand 2	C	234	239	anti-parallel
Strand 3	C	243	248	anti-parallel
Strand 4	C	254	259	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	293	298	anti-parallel
Strand 4	C	304	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WBU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WBU