Analysis of interatomic Contacts of Structural Units in PDB entry:
5WJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WJ5 entry

There are 4 chains in PDB entry 5WJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 60	HIS 526
B	GLY 60	HIS 526
C	GLY 60	HIS 526
D	GLY 60	HIS 526

There are 60 helices in PDB entry 5WJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	106	Right-handed alpha
Helix 2	AA2	A	121	138	Right-handed alpha
Helix 3	AA3	A	138	143	Right-handed alpha
Helix 4	AA4	A	243	247	Right-handed 310
Helix 5	AA5	A	291	333	Right-handed alpha
Helix 6	AA6	A	344	349	Right-handed alpha
Helix 7	AA7	A	353	378	Right-handed alpha
Helix 8	AA8	A	384	399	Right-handed alpha
Helix 9	AA9	A	400	406	Right-handed alpha
Helix 10	AB1	A	408	451	Right-handed alpha
Helix 11	AB2	A	452	455	Right-handed 310
Helix 12	AB3	A	456	468	Right-handed alpha
Helix 13	AB4	A	472	483	Right-handed alpha
Helix 14	AB5	A	487	508	Right-handed alpha
Helix 15	AB6	A	508	526	Right-handed alpha
Helix 16	AB7	B	69	106	Right-handed alpha
Helix 17	AB8	B	121	138	Right-handed alpha
Helix 18	AB9	B	138	143	Right-handed alpha
Helix 19	AC1	B	243	247	Right-handed 310
Helix 20	AC2	B	291	333	Right-handed alpha
Helix 21	AC3	B	344	349	Right-handed alpha
Helix 22	AC4	B	353	378	Right-handed alpha
Helix 23	AC5	B	384	399	Right-handed alpha
Helix 24	AC6	B	399	406	Right-handed alpha
Helix 25	AC7	B	408	451	Right-handed alpha
Helix 26	AC8	B	452	455	Right-handed 310
Helix 27	AC9	B	456	468	Right-handed alpha
Helix 28	AD1	B	472	483	Right-handed alpha
Helix 29	AD2	B	487	508	Right-handed alpha
Helix 30	AD3	B	508	526	Right-handed alpha
Helix 31	AD4	C	69	106	Right-handed alpha
Helix 32	AD5	C	121	138	Right-handed alpha
Helix 33	AD6	C	138	143	Right-handed alpha
Helix 34	AD7	C	243	247	Right-handed 310
Helix 35	AD8	C	291	333	Right-handed alpha
Helix 36	AD9	C	344	349	Right-handed alpha
Helix 37	AE1	C	353	378	Right-handed alpha
Helix 38	AE2	C	383	399	Right-handed alpha
Helix 39	AE3	C	400	406	Right-handed alpha
Helix 40	AE4	C	408	451	Right-handed alpha
Helix 41	AE5	C	452	455	Right-handed 310
Helix 42	AE6	C	456	468	Right-handed alpha
Helix 43	AE7	C	472	483	Right-handed alpha
Helix 44	AE8	C	487	508	Right-handed alpha
Helix 45	AE9	C	508	526	Right-handed alpha
Helix 46	AF1	D	69	106	Right-handed alpha
Helix 47	AF2	D	121	138	Right-handed alpha
Helix 48	AF3	D	138	143	Right-handed alpha
Helix 49	AF4	D	243	247	Right-handed 310
Helix 50	AF5	D	291	333	Right-handed alpha
Helix 51	AF6	D	344	349	Right-handed alpha
Helix 52	AF7	D	353	378	Right-handed alpha
Helix 53	AF8	D	384	399	Right-handed alpha
Helix 54	AF9	D	400	406	Right-handed alpha
Helix 55	AG1	D	408	451	Right-handed alpha
Helix 56	AG2	D	452	455	Right-handed 310
Helix 57	AG3	D	456	468	Right-handed alpha
Helix 58	AG4	D	472	483	Right-handed alpha
Helix 59	AG5	D	487	508	Right-handed alpha
Helix 60	AG6	D	508	526	Right-handed alpha

There are 8 sheets in PDB entry 5WJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	271	282	anti-parallel
Strand 3	A	253	263	anti-parallel
Strand 4	A	228	240	anti-parallel
Strand 5	A	148	149	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	271	282	anti-parallel
Strand 3	A	253	263	anti-parallel
Strand 4	A	228	240	anti-parallel
Strand 5	A	163	169	anti-parallel
Strand 6	A	192	195	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	271	282	anti-parallel
Strand 3	B	253	263	anti-parallel
Strand 4	B	228	240	anti-parallel
Strand 5	B	148	149	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	271	282	anti-parallel
Strand 3	B	253	263	anti-parallel
Strand 4	B	228	240	anti-parallel
Strand 5	B	163	169	anti-parallel
Strand 6	B	192	195	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	271	282	anti-parallel
Strand 3	C	253	263	anti-parallel
Strand 4	C	228	240	anti-parallel
Strand 5	C	148	149	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	271	282	anti-parallel
Strand 3	C	253	263	anti-parallel
Strand 4	C	228	240	anti-parallel
Strand 5	C	163	169	anti-parallel
Strand 6	C	192	195	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	271	282	anti-parallel
Strand 3	D	253	263	anti-parallel
Strand 4	D	228	240	anti-parallel
Strand 5	D	148	149	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	271	282	anti-parallel
Strand 3	D	253	263	anti-parallel
Strand 4	D	228	240	anti-parallel
Strand 5	D	163	169	anti-parallel
Strand 6	D	192	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WJ5