Analysis of interatomic Contacts of Structural Units in PDB entry:
5WJ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WJ6 entry

There are 4 chains in PDB entry 5WJ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 137	GLY 546
B	PRO 137	GLY 546
C	PRO 137	GLY 546
D	PRO 137	THR 188

There are 79 helices in PDB entry 5WJ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	138	149	Right-handed alpha
Helix 2	AA2	A	156	166	Right-handed alpha
Helix 3	AA3	A	172	174	Right-handed 310
Helix 4	AA4	A	175	189	Right-handed alpha
Helix 5	AA5	A	196	205	Right-handed alpha
Helix 6	AA6	A	207	216	Right-handed alpha
Helix 7	AA7	A	223	240	Right-handed alpha
Helix 8	AA8	A	250	255	Right-handed alpha
Helix 9	AA9	A	287	301	Right-handed alpha
Helix 10	AB1	A	301	306	Right-handed alpha
Helix 11	AB2	A	334	345	Right-handed alpha
Helix 12	AB3	A	350	366	Right-handed alpha
Helix 13	AB4	A	374	384	Right-handed alpha
Helix 14	AB5	A	385	398	Right-handed alpha
Helix 15	AB6	A	406	419	Right-handed alpha
Helix 16	AB7	A	423	436	Right-handed alpha
Helix 17	AB8	A	449	464	Right-handed alpha
Helix 18	AB9	A	465	467	Right-handed 310
Helix 19	AC1	A	468	476	Right-handed alpha
Helix 20	AC2	A	511	525	Right-handed alpha
Helix 21	AC3	B	138	149	Right-handed alpha
Helix 22	AC4	B	156	166	Right-handed alpha
Helix 23	AC5	B	172	174	Right-handed 310
Helix 24	AC6	B	175	189	Right-handed alpha
Helix 25	AC7	B	196	205	Right-handed alpha
Helix 26	AC8	B	207	216	Right-handed alpha
Helix 27	AC9	B	223	240	Right-handed alpha
Helix 28	AD1	B	287	301	Right-handed alpha
Helix 29	AD2	B	301	309	Right-handed alpha
Helix 30	AD3	B	317	321	Right-handed 310
Helix 31	AD4	B	334	345	Right-handed alpha
Helix 32	AD5	B	350	366	Right-handed alpha
Helix 33	AD6	B	374	384	Right-handed alpha
Helix 34	AD7	B	385	398	Right-handed alpha
Helix 35	AD8	B	406	419	Right-handed alpha
Helix 36	AD9	B	423	436	Right-handed alpha
Helix 37	AE1	B	449	464	Right-handed alpha
Helix 38	AE2	B	465	467	Right-handed 310
Helix 39	AE3	B	468	476	Right-handed alpha
Helix 40	AE4	B	511	525	Right-handed alpha
Helix 41	AE5	C	138	149	Right-handed alpha
Helix 42	AE6	C	156	166	Right-handed alpha
Helix 43	AE7	C	172	174	Right-handed 310
Helix 44	AE8	C	175	188	Right-handed alpha
Helix 45	AE9	C	196	205	Right-handed alpha
Helix 46	AF1	C	207	216	Right-handed alpha
Helix 47	AF2	C	223	240	Right-handed alpha
Helix 48	AF3	C	250	255	Right-handed alpha
Helix 49	AF4	C	287	301	Right-handed alpha
Helix 50	AF5	C	301	306	Right-handed alpha
Helix 51	AF6	C	334	345	Right-handed alpha
Helix 52	AF7	C	350	366	Right-handed alpha
Helix 53	AF8	C	374	384	Right-handed alpha
Helix 54	AF9	C	385	398	Right-handed alpha
Helix 55	AG1	C	406	419	Right-handed alpha
Helix 56	AG2	C	423	436	Right-handed alpha
Helix 57	AG3	C	449	464	Right-handed alpha
Helix 58	AG4	C	465	467	Right-handed 310
Helix 59	AG5	C	468	476	Right-handed alpha
Helix 60	AG6	C	511	525	Right-handed alpha
Helix 61	AG7	D	140	148	Right-handed alpha
Helix 62	AG8	D	155	165	Right-handed alpha
Helix 63	AG9	D	172	174	Right-handed 310
Helix 64	AH1	D	175	186	Right-handed alpha
Helix 65	AH2	D	196	205	Right-handed alpha
Helix 66	AH3	D	207	216	Right-handed alpha
Helix 67	AH4	D	223	240	Right-handed alpha
Helix 68	AH5	D	287	301	Right-handed alpha
Helix 69	AH6	D	301	309	Right-handed alpha
Helix 70	AH7	D	334	345	Right-handed alpha
Helix 71	AH8	D	350	366	Right-handed alpha
Helix 72	AH9	D	374	383	Right-handed alpha
Helix 73	AI1	D	385	398	Right-handed alpha
Helix 74	AI2	D	406	419	Right-handed alpha
Helix 75	AI3	D	423	436	Right-handed alpha
Helix 76	AI4	D	449	464	Right-handed alpha
Helix 77	AI5	D	465	467	Right-handed 310
Helix 78	AI6	D	468	476	Right-handed alpha
Helix 79	AI7	D	511	525	Right-handed alpha

There are 13 sheets in PDB entry 5WJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	194	195	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	504	505	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	276	first strand
Strand 2	A	262	267	anti-parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	487	492	anti-parallel
Strand 5	A	480	482	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	420	422	anti-parallel
Strand 3	A	371	373	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	194	195	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	276	first strand
Strand 2	B	262	267	anti-parallel
Strand 3	B	496	501	anti-parallel
Strand 4	B	487	492	anti-parallel
Strand 5	B	480	482	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	420	422	anti-parallel
Strand 3	B	371	373	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	194	195	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	246	first strand
Strand 2	C	504	505	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	276	first strand
Strand 2	C	262	267	anti-parallel
Strand 3	C	496	501	anti-parallel
Strand 4	C	487	492	anti-parallel
Strand 5	C	480	482	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	283	first strand
Strand 2	C	420	422	anti-parallel
Strand 3	C	372	373	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	272	276	first strand
Strand 2	D	262	267	anti-parallel
Strand 3	D	496	501	anti-parallel
Strand 4	D	487	492	anti-parallel
Strand 5	D	480	482	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	283	first strand
Strand 2	D	420	422	anti-parallel
Strand 3	D	371	373	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WJ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WJ6