Analysis of interatomic Contacts of Structural Units in PDB entry:
5WTI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WTI entry

There are 4 chains in PDB entry 5WTI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	A 1	A 28
H	G 1	C 11
Z	MET 1	GLN 1093
B	G -1	U 121

There are 34 helices in PDB entry 5WTI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Z	13	43	Right-handed alpha
Helix 2	AA2	Z	61	80	Right-handed alpha
Helix 3	AA3	Z	87	103	Right-handed alpha
Helix 4	AA4	Z	104	108	Right-handed 310
Helix 5	AA5	Z	112	126	Right-handed alpha
Helix 6	AA6	Z	142	151	Right-handed alpha
Helix 7	AA7	Z	154	169	Right-handed alpha
Helix 8	AA8	Z	170	181	Right-handed alpha
Helix 9	AA9	Z	189	193	Right-handed 310
Helix 10	AB1	Z	195	199	Right-handed 310
Helix 11	AB2	Z	213	256	Right-handed alpha
Helix 12	AB3	Z	258	281	Right-handed alpha
Helix 13	AB4	Z	295	307	Right-handed alpha
Helix 14	AB5	Z	311	326	Right-handed alpha
Helix 15	AB6	Z	332	340	Right-handed alpha
Helix 16	AB7	Z	353	370	Right-handed alpha
Helix 17	AB8	Z	406	410	Right-handed 310
Helix 18	AB9	Z	447	452	Right-handed alpha
Helix 19	AC1	Z	489	496	Right-handed alpha
Helix 20	AC2	Z	496	502	Right-handed alpha
Helix 21	AC3	Z	544	552	Right-handed alpha
Helix 22	AC4	Z	560	566	Right-handed 310
Helix 23	AC5	Z	626	656	Right-handed alpha
Helix 24	AC6	Z	662	678	Right-handed alpha
Helix 25	AC7	Z	690	694	Right-handed alpha
Helix 26	AC8	Z	699	728	Right-handed alpha
Helix 27	AC9	Z	740	759	Right-handed alpha
Helix 28	AD1	Z	777	804	Right-handed alpha
Helix 29	AD2	Z	840	849	Right-handed alpha
Helix 30	AD3	Z	853	865	Right-handed alpha
Helix 31	AD4	Z	951	966	Right-handed alpha
Helix 32	AD5	Z	1006	1010	Right-handed 310
Helix 33	AD6	Z	1043	1052	Right-handed alpha
Helix 34	AD7	Z	1074	1092	Right-handed alpha

There are 8 sheets in PDB entry 5WTI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	2	9	first strand
Strand 2	Z	508	516	anti-parallel
Strand 3	Z	477	488	anti-parallel
Strand 4	Z	389	391	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	2	9	first strand
Strand 2	Z	508	516	anti-parallel
Strand 3	Z	477	488	anti-parallel
Strand 4	Z	465	468	anti-parallel
Strand 5	Z	454	456	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	46	48	first strand
Strand 2	Z	58	60	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	201	202	first strand
Strand 2	Z	434	444	parallel
Strand 3	Z	418	428	anti-parallel
Strand 4	Z	402	404	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	600	602	first strand
Strand 2	Z	609	618	anti-parallel
Strand 3	Z	581	589	anti-parallel
Strand 4	Z	569	575	anti-parallel
Strand 5	Z	824	828	parallel
Strand 6	Z	869	873	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	806	809	first strand
Strand 2	Z	814	817	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	928	930	first strand
Strand 2	Z	890	894	anti-parallel
Strand 3	Z	936	940	anti-parallel
Strand 4	Z	946	950	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	972	975	first strand
Strand 2	Z	1056	1059	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WTI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WTI