Analysis of interatomic Contacts of Structural Units in PDB entry:
5WVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WVD entry

There are 2 chains in PDB entry 5WVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 41GLN 334
B
 PRO 41VAL 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5WVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 46Right-handed 310
Helix 2
AA2
A
86 99Right-handed alpha
Helix 3
AA3
A
131 140Right-handed alpha
Helix 4
AA4
A
143 164Right-handed alpha
Helix 5
AA5
A
172 174Right-handed 310
Helix 6
AA6
A
235 256Right-handed alpha
Helix 7
AA7
A
295 300Right-handed alpha
Helix 8
AA8
A
303 314Right-handed alpha
Helix 9
AA9
A
323 329Right-handed alpha
Helix 10
AB1
B
43 46Right-handed 310
Helix 11
AB2
B
86 99Right-handed alpha
Helix 12
AB3
B
131 137Right-handed alpha
Helix 13
AB4
B
148 164Right-handed alpha
Helix 14
AB5
B
172 174Right-handed 310
Helix 15
AB6
B
235 256Right-handed alpha
Helix 16
AB7
B
323 329Right-handed alpha
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There are 4 sheets in PDB entry 5WVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 57first strand
Strand 2
A
61 68anti-parallel
Strand 3
A
74 81anti-parallel
Strand 4
A
119 125anti-parallel
Strand 5
A
110 115anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
187 189anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 56first strand
Strand 2
B
61 68anti-parallel
Strand 3
B
74 81anti-parallel
Strand 4
B
119 125anti-parallel
Strand 5
B
110 115anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
187 189anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il