Analysis of interatomic Contacts of Structural Units in PDB entry:
5WWT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WWT entry

There are 4 chains in PDB entry 5WWT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	CYS 466
C	A 2	A 76
D	A 2	A 76
B	SER 2	CYS 466

There are 32 helices in PDB entry 5WWT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	22	Right-handed alpha
Helix 2	AA2	A	23	31	Right-handed alpha
Helix 3	AA3	A	31	46	Right-handed alpha
Helix 4	AA4	A	63	79	Right-handed alpha
Helix 5	AA5	A	118	126	Right-handed alpha
Helix 6	AA6	A	180	186	Right-handed alpha
Helix 7	AA7	A	220	231	Right-handed alpha
Helix 8	AA8	A	246	256	Right-handed alpha
Helix 9	AA9	A	268	283	Right-handed alpha
Helix 10	AB1	A	293	297	Right-handed 310
Helix 11	AB2	A	340	345	Right-handed alpha
Helix 12	AB3	A	347	361	Right-handed alpha
Helix 13	AB4	A	380	391	Right-handed alpha
Helix 14	AB5	A	414	420	Right-handed alpha
Helix 15	AB6	A	435	441	Right-handed alpha
Helix 16	AB7	A	443	454	Right-handed alpha
Helix 17	AB8	B	10	22	Right-handed alpha
Helix 18	AB9	B	23	31	Right-handed alpha
Helix 19	AC1	B	31	46	Right-handed alpha
Helix 20	AC2	B	63	79	Right-handed alpha
Helix 21	AC3	B	118	126	Right-handed alpha
Helix 22	AC4	B	180	186	Right-handed alpha
Helix 23	AC5	B	220	231	Right-handed alpha
Helix 24	AC6	B	246	256	Right-handed alpha
Helix 25	AC7	B	268	283	Right-handed alpha
Helix 26	AC8	B	293	297	Right-handed 310
Helix 27	AC9	B	340	345	Right-handed alpha
Helix 28	AD1	B	347	361	Right-handed alpha
Helix 29	AD2	B	380	391	Right-handed alpha
Helix 30	AD3	B	414	420	Right-handed alpha
Helix 31	AD4	B	435	441	Right-handed alpha
Helix 32	AD5	B	443	454	Right-handed alpha

There are 10 sheets in PDB entry 5WWT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	9	first strand
Strand 2	A	336	337	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	95	99	anti-parallel
Strand 3	A	52	57	anti-parallel
Strand 4	A	216	218	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	170	177	anti-parallel
Strand 4	A	147	153	anti-parallel
Strand 5	A	113	117	parallel
Strand 6	A	135	138	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	291	first strand
Strand 2	A	261	266	parallel
Strand 3	A	237	240	parallel
Strand 4	A	317	322	parallel
Strand 5	A	362	372	parallel
Strand 6	A	458	464	anti-parallel
Strand 7	A	395	396	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	291	first strand
Strand 2	A	261	266	parallel
Strand 3	A	237	240	parallel
Strand 4	A	317	322	parallel
Strand 5	A	362	372	parallel
Strand 6	A	458	464	anti-parallel
Strand 7	A	422	424	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	336	337	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	95	99	anti-parallel
Strand 3	B	52	57	anti-parallel
Strand 4	B	216	218	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	194	201	anti-parallel
Strand 3	B	170	177	anti-parallel
Strand 4	B	147	153	anti-parallel
Strand 5	B	113	117	parallel
Strand 6	B	135	138	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	291	first strand
Strand 2	B	261	266	parallel
Strand 3	B	237	240	parallel
Strand 4	B	317	322	parallel
Strand 5	B	362	372	parallel
Strand 6	B	458	464	anti-parallel
Strand 7	B	395	396	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	291	first strand
Strand 2	B	261	266	parallel
Strand 3	B	237	240	parallel
Strand 4	B	317	322	parallel
Strand 5	B	362	372	parallel
Strand 6	B	458	464	anti-parallel
Strand 7	B	422	424	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WWT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WWT