Analysis of interatomic Contacts of Structural Units in PDB entry:
5WWW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WWW entry

There are 2 chains in PDB entry 5WWW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 213SER 306
B
G 4 G 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5WWW. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
213 227Right-handed alpha
Helix 2
AA2
A
240 249Right-handed alpha
Helix 3
AA3
A
252 263Right-handed alpha
Helix 4
AA4
A
282 305Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5WWW.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
232 237first strand
Strand 2
A
276 281anti-parallel
Strand 3
A
265 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il