Analysis of interatomic Contacts of Structural Units in PDB entry:
5WWX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WWX entry

There are 2 chains in PDB entry 5WWX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
HIS 313GLY 396
C
A 1 U 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5WWX. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
334 336Right-handed 310
Helix 2
AA2
A
337 343Right-handed alpha
Helix 3
AA3
A
346 357Right-handed alpha
Helix 4
AA4
A
376 396Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5WWX.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
327 332first strand
Strand 2
A
370 375anti-parallel
Strand 3
A
359 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il