Analysis of interatomic Contacts of Structural Units in PDB entry:
5WWZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WWZ entry

There are 3 chains in PDB entry 5WWZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
HIS 314MET 393
A
HIS 314ILE 391
C
HIS 314ALA 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5WWZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
334 336Right-handed 310
Helix 2
AA2
B
337 343Right-handed alpha
Helix 3
AA3
B
346 357Right-handed alpha
Helix 4
AA4
B
376 390Right-handed alpha
Helix 5
AA5
A
334 336Right-handed 310
Helix 6
AA6
A
337 343Right-handed alpha
Helix 7
AA7
A
346 357Right-handed alpha
Helix 8
AA8
A
376 391Right-handed alpha
Helix 9
AA9
C
334 336Right-handed 310
Helix 10
AB1
C
337 343Right-handed alpha
Helix 11
AB2
C
346 357Right-handed alpha
Helix 12
AB3
C
376 390Right-handed alpha
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There are 4 sheets in PDB entry 5WWZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
327 332first strand
Strand 2
B
370 375anti-parallel
Strand 3
B
359 361anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
317 321first strand
Strand 2
C
317 321anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
327 332first strand
Strand 2
A
370 375anti-parallel
Strand 3
A
359 361anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
327 332first strand
Strand 2
C
370 375anti-parallel
Strand 3
C
359 361anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il