Analysis of interatomic Contacts of Structural Units in PDB entry:
5WY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WY8 entry

There are 2 chains in PDB entry 5WY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 21THR 318
B
SER 27LEU 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5WY8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
198 202Right-handed 310
Helix 2
AA2
B
53 59Right-handed alpha
Helix 3
AA3
B
63 70Right-handed alpha
Helix 4
AA4
B
109 113Right-handed 310
Helix 5
AA5
B
167 171Right-handed 310
Helix 6
AA6
B
207 211Right-handed 310
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There are 15 sheets in PDB entry 5WY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
25 28first strand
Strand 2
A
41 48anti-parallel
Strand 3
A
80 84anti-parallel
Strand 4
A
69 73anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
33 36first strand
Strand 2
A
106 116parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
54 59anti-parallel
Strand 5
A
62 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
127 130first strand
Strand 2
A
143 150anti-parallel
Strand 3
A
188 194anti-parallel
Strand 4
A
175 179anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
135 138first strand
Strand 2
A
221 226parallel
Strand 3
A
203 210anti-parallel
Strand 4
A
156 161anti-parallel
Strand 5
A
164 165anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
135 138first strand
Strand 2
A
221 226parallel
Strand 3
A
203 210anti-parallel
Strand 4
A
215 217anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
234 240first strand
Strand 2
A
253 262anti-parallel
Strand 3
A
286 291anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
274 275first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
298 305anti-parallel
Strand 4
A
310 317anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
32 34first strand
Strand 2
B
126 136parallel
Strand 3
B
40 44parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
32 34first strand
Strand 2
B
126 136parallel
Strand 3
B
114 121anti-parallel
Strand 4
B
73 79anti-parallel
Strand 5
B
87 88anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
49 52first strand
Strand 2
B
102 105anti-parallel
Strand 3
B
96 99anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
150 155first strand
Strand 2
B
223 234parallel
Strand 3
B
212 220anti-parallel
Strand 4
B
180 183anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
160 163first strand
Strand 2
B
200 203anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
243 246first strand
Strand 2
B
263 271anti-parallel
Strand 3
B
312 321anti-parallel
Strand 4
B
298 300anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
243 246first strand
Strand 2
B
263 271anti-parallel
Strand 3
B
312 321anti-parallel
Strand 4
B
304 309anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
253 254first strand
Strand 2
B
341 348parallel
Strand 3
B
331 338anti-parallel
Strand 4
B
280 285anti-parallel
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