Analysis of interatomic Contacts of Structural Units in PDB entry:
5WYF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WYF entry

There are 4 chains in PDB entry 5WYF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TRP 450
B	LYS 3	TRP 450
C	MET 1	TRP 450
D	LYS 3	TRP 450

There are 72 helices in PDB entry 5WYF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	15	Right-handed alpha
Helix 2	AA2	A	19	23	Right-handed 310
Helix 3	AA3	A	51	56	Right-handed alpha
Helix 4	AA4	A	63	77	Right-handed alpha
Helix 5	AA5	A	88	101	Right-handed alpha
Helix 6	AA6	A	114	131	Right-handed alpha
Helix 7	AA7	A	146	153	Right-handed alpha
Helix 8	AA8	A	156	160	Right-handed 310
Helix 9	AA9	A	186	203	Right-handed alpha
Helix 10	AB1	A	207	209	Right-handed 310
Helix 11	AB2	A	229	243	Right-handed alpha
Helix 12	AB3	A	263	268	Right-handed 310
Helix 13	AB4	A	279	284	Right-handed 310
Helix 14	AB5	A	295	299	Right-handed alpha
Helix 15	AB6	A	313	330	Right-handed alpha
Helix 16	AB7	A	331	354	Right-handed alpha
Helix 17	AB8	A	381	395	Right-handed alpha
Helix 18	AB9	A	416	436	Right-handed alpha
Helix 19	AC1	B	4	15	Right-handed alpha
Helix 20	AC2	B	19	23	Right-handed 310
Helix 21	AC3	B	51	56	Right-handed alpha
Helix 22	AC4	B	63	77	Right-handed alpha
Helix 23	AC5	B	88	101	Right-handed alpha
Helix 24	AC6	B	114	131	Right-handed alpha
Helix 25	AC7	B	146	153	Right-handed alpha
Helix 26	AC8	B	156	160	Right-handed 310
Helix 27	AC9	B	186	203	Right-handed alpha
Helix 28	AD1	B	207	209	Right-handed 310
Helix 29	AD2	B	229	244	Right-handed alpha
Helix 30	AD3	B	263	268	Right-handed 310
Helix 31	AD4	B	279	284	Right-handed 310
Helix 32	AD5	B	295	299	Right-handed alpha
Helix 33	AD6	B	313	330	Right-handed alpha
Helix 34	AD7	B	331	354	Right-handed alpha
Helix 35	AD8	B	381	395	Right-handed alpha
Helix 36	AD9	B	416	436	Right-handed alpha
Helix 37	AE1	C	4	15	Right-handed alpha
Helix 38	AE2	C	19	23	Right-handed 310
Helix 39	AE3	C	51	56	Right-handed alpha
Helix 40	AE4	C	63	77	Right-handed alpha
Helix 41	AE5	C	87	101	Right-handed alpha
Helix 42	AE6	C	114	131	Right-handed alpha
Helix 43	AE7	C	146	153	Right-handed alpha
Helix 44	AE8	C	156	160	Right-handed 310
Helix 45	AE9	C	186	203	Right-handed alpha
Helix 46	AF1	C	207	209	Right-handed 310
Helix 47	AF2	C	229	243	Right-handed alpha
Helix 48	AF3	C	263	268	Right-handed 310
Helix 49	AF4	C	279	284	Right-handed 310
Helix 50	AF5	C	295	299	Right-handed alpha
Helix 51	AF6	C	313	330	Right-handed alpha
Helix 52	AF7	C	331	354	Right-handed alpha
Helix 53	AF8	C	381	395	Right-handed alpha
Helix 54	AF9	C	416	436	Right-handed alpha
Helix 55	AG1	D	4	15	Right-handed alpha
Helix 56	AG2	D	19	23	Right-handed 310
Helix 57	AG3	D	51	56	Right-handed alpha
Helix 58	AG4	D	63	77	Right-handed alpha
Helix 59	AG5	D	88	101	Right-handed alpha
Helix 60	AG6	D	114	131	Right-handed alpha
Helix 61	AG7	D	146	153	Right-handed alpha
Helix 62	AG8	D	156	160	Right-handed 310
Helix 63	AG9	D	186	203	Right-handed alpha
Helix 64	AH1	D	207	209	Right-handed 310
Helix 65	AH2	D	229	244	Right-handed alpha
Helix 66	AH3	D	263	268	Right-handed 310
Helix 67	AH4	D	279	284	Right-handed 310
Helix 68	AH5	D	295	299	Right-handed alpha
Helix 69	AH6	D	313	330	Right-handed alpha
Helix 70	AH7	D	331	354	Right-handed alpha
Helix 71	AH8	D	381	395	Right-handed alpha
Helix 72	AH9	D	416	436	Right-handed alpha

There are 16 sheets in PDB entry 5WYF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	46	49	parallel
Strand 3	A	38	41	anti-parallel
Strand 4	A	30	35	anti-parallel
Strand 5	B	86	87	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	B	30	35	parallel
Strand 3	B	38	41	anti-parallel
Strand 4	B	46	49	anti-parallel
Strand 5	B	397	398	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	112	first strand
Strand 2	A	289	294	anti-parallel
Strand 3	A	275	278	anti-parallel
Strand 4	A	246	250	parallel
Strand 5	A	211	216	parallel
Strand 6	A	134	138	parallel
Strand 7	A	170	173	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	A	226	227	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	362	first strand
Strand 2	A	367	371	anti-parallel
Strand 3	A	406	409	anti-parallel
Strand 4	A	400	402	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	112	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	275	278	anti-parallel
Strand 4	B	246	250	parallel
Strand 5	B	211	216	parallel
Strand 6	B	134	138	parallel
Strand 7	B	170	173	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	220	first strand
Strand 2	B	226	227	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	362	first strand
Strand 2	B	367	371	anti-parallel
Strand 3	B	406	409	anti-parallel
Strand 4	B	400	402	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	398	first strand
Strand 2	C	46	49	parallel
Strand 3	C	38	41	anti-parallel
Strand 4	C	30	35	anti-parallel
Strand 5	D	86	87	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	112	first strand
Strand 2	C	289	294	anti-parallel
Strand 3	C	275	278	anti-parallel
Strand 4	C	246	250	parallel
Strand 5	C	211	216	parallel
Strand 6	C	134	138	parallel
Strand 7	C	170	173	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	220	first strand
Strand 2	C	226	227	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	362	first strand
Strand 2	C	367	371	anti-parallel
Strand 3	C	406	409	anti-parallel
Strand 4	C	400	402	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	35	first strand
Strand 2	D	38	41	anti-parallel
Strand 3	D	46	49	anti-parallel
Strand 4	D	397	398	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	112	first strand
Strand 2	D	289	294	anti-parallel
Strand 3	D	275	278	anti-parallel
Strand 4	D	246	250	parallel
Strand 5	D	211	216	parallel
Strand 6	D	134	138	parallel
Strand 7	D	170	173	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	220	first strand
Strand 2	D	226	227	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	362	first strand
Strand 2	D	367	371	anti-parallel
Strand 3	D	406	409	anti-parallel
Strand 4	D	400	402	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WYF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WYF