Analysis of interatomic Contacts of Structural Units in PDB entry:
5X8R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5X8R entry

There are 26 chains in PDB entry 5X8R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
b	TYR 5	SER 231
c	GLN 3	MET 215
e	GLY 138	LYS 308
f	PRO 97	ARG 207
g	ARG 4	ALA 152
h	MET 1	TRP 134
i	LEU 63	SER 195
j	LYS 98	LEU 195
k	SER 21	VAL 138
l	MET 1	LYS 123
m	PRO 32	ARG 141
o	SER 21	LEU 82
p	MET 1	PHE 80
q	MET 58	GLN 135
r	PRO 21	PHE 84
s	LYS 7	ALA 84
t	ALA 76	PRO 180
u	ASN 95	LYS 138
y	GLY 70	ASP 177
a	U 3	C 1488
w	LYS 96	SER 179
d	SER 2	GLN 200
v	SER 9	ALA 198
n	ALA 2	TRP 100
x	GLY 55	PHE 91
8	THR 50	GLU 377

There are 90 helices in PDB entry 5X8R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	b	9	16	Right-handed alpha
Helix 2	AA2	b	28	32	Right-handed 310
Helix 3	AA3	b	46	68	Right-handed alpha
Helix 4	AA4	b	80	90	Right-handed alpha
Helix 5	AA5	b	107	127	Right-handed alpha
Helix 6	AA6	b	134	152	Right-handed alpha
Helix 7	AA7	b	173	184	Right-handed alpha
Helix 8	AA8	b	210	230	Right-handed alpha
Helix 9	AA9	c	6	11	Right-handed alpha
Helix 10	AB1	c	25	53	Right-handed alpha
Helix 11	AB2	c	80	84	Right-handed 310
Helix 12	AB3	c	89	101	Right-handed alpha
Helix 13	AB4	c	123	137	Right-handed alpha
Helix 14	AB5	c	140	154	Right-handed alpha
Helix 15	AB6	c	188	191	Right-handed 310
Helix 16	AB7	e	196	209	Right-handed alpha
Helix 17	AB8	e	250	259	Right-handed alpha
Helix 18	AB9	e	275	288	Right-handed alpha
Helix 19	AC1	e	292	300	Right-handed alpha
Helix 20	AC2	f	124	137	Right-handed alpha
Helix 21	AC3	f	185	195	Right-handed alpha
Helix 22	AC4	g	20	30	Right-handed alpha
Helix 23	AC5	g	35	54	Right-handed alpha
Helix 24	AC6	g	57	68	Right-handed alpha
Helix 25	AC7	g	92	109	Right-handed alpha
Helix 26	AC8	g	115	130	Right-handed alpha
Helix 27	AC9	g	133	146	Right-handed alpha
Helix 28	AD1	h	5	18	Right-handed alpha
Helix 29	AD2	h	29	41	Right-handed alpha
Helix 30	AD3	h	98	103	Right-handed 310
Helix 31	AD4	h	116	122	Right-handed alpha
Helix 32	AD5	i	101	105	Right-handed alpha
Helix 33	AD6	i	109	123	Right-handed alpha
Helix 34	AD7	i	138	156	Right-handed alpha
Helix 35	AD8	i	157	160	Right-handed 310
Helix 36	AD9	i	161	168	Right-handed alpha
Helix 37	AE1	j	107	126	Right-handed alpha
Helix 38	AE2	j	173	181	Right-handed alpha
Helix 39	AE3	k	68	81	Right-handed alpha
Helix 40	AE4	k	82	84	Right-handed 310
Helix 41	AE5	k	101	113	Right-handed alpha
Helix 42	AE6	m	44	51	Right-handed alpha
Helix 43	AE7	m	56	64	Right-handed alpha
Helix 44	AE8	m	79	93	Right-handed alpha
Helix 45	AE9	m	95	113	Right-handed alpha
Helix 46	AF1	m	115	123	Right-handed alpha
Helix 47	AF2	o	22	41	Right-handed alpha
Helix 48	AF3	o	48	71	Right-handed alpha
Helix 49	AF4	o	72	82	Right-handed alpha
Helix 50	AF5	p	49	60	Right-handed alpha
Helix 51	AF6	p	64	74	Right-handed alpha
Helix 52	AF7	r	48	53	Right-handed alpha
Helix 53	AF8	r	55	72	Right-handed alpha
Helix 54	AF9	s	12	23	Right-handed alpha
Helix 55	AG1	s	41	45	Right-handed 310
Helix 56	AG2	s	70	74	Right-handed 310
Helix 57	AG3	t	82	120	Right-handed alpha
Helix 58	AG4	t	127	148	Right-handed alpha
Helix 59	AG5	t	155	171	Right-handed alpha
Helix 60	AG6	u	100	106	Right-handed alpha
Helix 61	AG7	u	107	113	Right-handed 310
Helix 62	AG8	u	122	137	Right-handed alpha
Helix 63	AG9	y	87	102	Right-handed alpha
Helix 64	AH1	y	152	175	Right-handed alpha
Helix 65	AH2	w	137	148	Right-handed alpha
Helix 66	AH3	w	152	176	Right-handed alpha
Helix 67	AH4	d	8	16	Right-handed alpha
Helix 68	AH5	d	42	59	Right-handed alpha
Helix 69	AH6	d	61	75	Right-handed alpha
Helix 70	AH7	d	78	87	Right-handed alpha
Helix 71	AH8	d	90	98	Right-handed alpha
Helix 72	AH9	d	103	113	Right-handed alpha
Helix 73	AI1	d	139	144	Right-handed 310
Helix 74	AI2	d	146	155	Right-handed alpha
Helix 75	AI3	d	189	197	Right-handed alpha
Helix 76	AI4	v	10	20	Right-handed alpha
Helix 77	AI5	v	34	44	Right-handed alpha
Helix 78	AI6	v	72	84	Right-handed alpha
Helix 79	AI7	v	105	116	Right-handed alpha
Helix 80	AI8	v	134	145	Right-handed alpha
Helix 81	AI9	v	172	184	Right-handed alpha
Helix 82	AJ1	n	3	32	Right-handed alpha
Helix 83	AJ2	n	43	49	Right-handed alpha
Helix 84	AJ3	n	80	86	Right-handed alpha
Helix 85	AJ4	x	61	69	Right-handed alpha
Helix 86	AJ5	8	51	66	Right-handed alpha
Helix 87	AJ6	8	250	257	Right-handed alpha
Helix 88	AJ7	8	289	292	Right-handed 310
Helix 89	AJ8	8	319	323	Right-handed 310
Helix 90	AJ9	8	341	359	Right-handed alpha

There are 30 sheets in PDB entry 5X8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	37	39	first strand
Strand 2	b	42	44	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	94	95	first strand
Strand 2	b	72	73	parallel
Strand 3	b	165	166	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	190	191	first strand
Strand 2	b	204	205	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	20	21	first strand
Strand 2	c	60	67	parallel
Strand 3	c	71	78	anti-parallel
Strand 4	c	109	112	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	20	21	first strand
Strand 2	c	60	67	parallel
Strand 3	c	71	78	anti-parallel
Strand 4	c	115	116	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	177	181	first strand
Strand 2	c	159	164	anti-parallel
Strand 3	c	206	214	anti-parallel
Strand 4	c	193	201	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	153	165	first strand
Strand 2	e	170	182	anti-parallel
Strand 3	e	191	194	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	153	165	first strand
Strand 2	e	170	182	anti-parallel
Strand 3	e	186	188	anti-parallel
Strand 4	e	213	214	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	227	228	first strand
Strand 2	e	234	240	anti-parallel
Strand 3	e	265	271	anti-parallel
Strand 4	e	248	249	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	106	107	first strand
Strand 2	f	179	180	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	146	155	first strand
Strand 2	f	168	176	anti-parallel
Strand 3	f	109	114	anti-parallel
Strand 4	f	198	204	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	74	75	first strand
Strand 2	g	88	89	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	78	80	first strand
Strand 2	g	83	85	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	24	27	first strand
Strand 2	h	58	63	anti-parallel
Strand 3	h	45	51	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	114	115	first strand
Strand 2	h	105	109	anti-parallel
Strand 3	h	128	133	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	73	78	first strand
Strand 2	i	81	86	anti-parallel
Strand 3	i	132	135	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	95	96	first strand
Strand 2	i	99	100	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	130	134	first strand
Strand 2	j	156	169	anti-parallel
Strand 3	j	138	144	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	130	134	first strand
Strand 2	j	156	169	anti-parallel
Strand 3	j	99	105	anti-parallel
Strand 4	j	190	194	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	50	55	first strand
Strand 2	k	39	44	anti-parallel
Strand 3	k	28	34	anti-parallel
Strand 4	k	90	96	parallel
Strand 5	k	115	121	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	39	40	first strand
Strand 2	l	50	57	anti-parallel
Strand 3	l	62	66	anti-parallel
Strand 4	l	95	97	parallel
Strand 5	l	79	84	anti-parallel
Strand 6	l	29	36	anti-parallel
Strand 7	l	50	57	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	2	8	first strand
Strand 2	p	17	23	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	61	64	first strand
Strand 2	q	111	116	anti-parallel
Strand 3	q	126	128	anti-parallel
Strand 4	q	90	100	parallel
Strand 5	q	73	83	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	48	52	first strand
Strand 2	s	57	61	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	76	82	first strand
Strand 2	y	111	119	parallel
Strand 3	y	129	136	anti-parallel
Strand 4	y	144	150	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	w	100	106	first strand
Strand 2	w	109	115	anti-parallel
Strand 3	w	129	130	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	117	118	first strand
Strand 2	d	121	122	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	48	53	first strand
Strand 2	v	65	70	anti-parallel
Strand 3	v	23	27	anti-parallel
Strand 4	v	91	96	anti-parallel
Strand 5	v	86	88	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	148	154	first strand
Strand 2	v	165	170	anti-parallel
Strand 3	v	123	127	anti-parallel
Strand 4	v	191	198	anti-parallel
Strand 5	v	186	188	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	8	309	310	first strand
Strand 2	8	266	272	anti-parallel
Strand 3	8	275	280	anti-parallel
Strand 4	8	283	287	anti-parallel
Strand 5	8	325	326	parallel
Strand 6	8	314	315	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5X8R

Analysis of interatomic Contacts of Structural Units in PDB entry:
5X8R