Analysis of interatomic Contacts of Structural Units in PDB entry:
5XGS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XGS entry

There are 2 chains in PDB entry 5XGS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 59SER 462
B
 ARG 57ILE 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5XGS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 79Right-handed 310
Helix 2
AA2
A
277 281Right-handed 310
Helix 3
AA3
A
381 386Right-handed 310
Helix 4
AA4
B
74 79Right-handed 310
Helix 5
AA5
B
277 281Right-handed 310
Helix 6
AA6
B
381 386Right-handed 310
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There are 14 sheets in PDB entry 5XGS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 102first strand
Strand 2
A
60 66anti-parallel
Strand 3
A
455 461anti-parallel
Strand 4
A
445 451anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 114first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
131 136anti-parallel
Strand 4
A
157 163anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 181first strand
Strand 2
A
185 190anti-parallel
Strand 3
A
195 199anti-parallel
Strand 4
A
223 225anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 237first strand
Strand 2
A
241 246anti-parallel
Strand 3
A
251 255anti-parallel
Strand 4
A
270 275anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 290first strand
Strand 2
A
294 299anti-parallel
Strand 3
A
304 309anti-parallel
Strand 4
A
323 329anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 343first strand
Strand 2
A
347 352anti-parallel
Strand 3
A
357 362anti-parallel
Strand 4
A
373 379anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 401first strand
Strand 2
A
405 410anti-parallel
Strand 3
A
415 419anti-parallel
Strand 4
A
434 440anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 103first strand
Strand 2
B
59 66anti-parallel
Strand 3
B
455 461anti-parallel
Strand 4
B
445 451anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 114first strand
Strand 2
B
118 122anti-parallel
Strand 3
B
131 136anti-parallel
Strand 4
B
157 163anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 181first strand
Strand 2
B
185 190anti-parallel
Strand 3
B
195 199anti-parallel
Strand 4
B
223 225anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 237first strand
Strand 2
B
241 246anti-parallel
Strand 3
B
251 255anti-parallel
Strand 4
B
270 275anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 290first strand
Strand 2
B
294 299anti-parallel
Strand 3
B
304 309anti-parallel
Strand 4
B
323 329anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 343first strand
Strand 2
B
347 352anti-parallel
Strand 3
B
357 362anti-parallel
Strand 4
B
373 379anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 401first strand
Strand 2
B
405 410anti-parallel
Strand 3
B
415 419anti-parallel
Strand 4
B
434 440anti-parallel
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