Analysis of interatomic Contacts of Structural Units in PDB entry:
5XJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XJY entry

There is 1 chain in PDB entry 5XJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
CYS 3SER 2234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 5XJY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
3 20Right-handed alpha
Helix 2
AA2
A
23 45Right-handed alpha
Helix 3
AA3
A
65 75Right-handed alpha
Helix 4
AA4
A
86 90Right-handed 310
Helix 5
AA5
A
100 117Right-handed alpha
Helix 6
AA6
A
120 134Right-handed alpha
Helix 7
AA7
A
200 210Right-handed alpha
Helix 8
AA8
A
215 227Right-handed alpha
Helix 9
AA9
A
229 242Right-handed alpha
Helix 10
AB1
A
251 275Right-handed alpha
Helix 11
AB2
A
276 286Right-handed alpha
Helix 12
AB3
A
298 309Right-handed alpha
Helix 13
AB4
A
353 365Right-handed alpha
Helix 14
AB5
A
369 380Right-handed alpha
Helix 15
AB6
A
389 405Right-handed alpha
Helix 16
AB7
A
410 427Right-handed alpha
Helix 17
AB8
A
430 440Right-handed alpha
Helix 18
AB9
A
443 448Right-handed alpha
Helix 19
AC1
A
448 455Right-handed alpha
Helix 20
AC2
A
461 468Right-handed alpha
Helix 21
AC3
A
483 502Right-handed alpha
Helix 22
AC4
A
515 529Right-handed alpha
Helix 23
AC5
A
592 609Right-handed alpha
Helix 24
AC6
A
630 639Right-handed alpha
Helix 25
AC7
A
640 665Right-handed alpha
Helix 26
AC8
A
666 674Right-handed alpha
Helix 27
AC9
A
677 706Right-handed alpha
Helix 28
AD1
A
714 736Right-handed alpha
Helix 29
AD2
A
742 759Right-handed alpha
Helix 30
AD3
A
761 765Right-handed 310
Helix 31
AD4
A
773 781Right-handed alpha
Helix 32
AD5
A
783 797Right-handed alpha
Helix 33
AD6
A
820 844Right-handed alpha
Helix 34
AD7
A
938 948Right-handed alpha
Helix 35
AD8
A
964 968Right-handed 310
Helix 36
AD9
A
989 1002Right-handed alpha
Helix 37
AE1
A
1006 1020Right-handed alpha
Helix 38
AE2
A
1021 1028Right-handed alpha
Helix 39
AE3
A
1037 1047Right-handed alpha
Helix 40
AE4
A
1063 1065Right-handed 310
Helix 41
AE5
A
1066 1078Right-handed alpha
Helix 42
AE6
A
1079 1081Right-handed 310
Helix 43
AE7
A
1091 1097Right-handed alpha
Helix 44
AE8
A
1114 1122Right-handed alpha
Helix 45
AE9
A
1129 1137Right-handed alpha
Helix 46
AF1
A
1165 1176Right-handed alpha
Helix 47
AF2
A
1206 1212Right-handed alpha
Helix 48
AF3
A
1323 1342Right-handed alpha
Helix 49
AF4
A
1348 1366Right-handed alpha
Helix 50
AF5
A
1400 1409Right-handed alpha
Helix 51
AF6
A
1444 1453Right-handed alpha
Helix 52
AF7
A
1504 1523Right-handed alpha
Helix 53
AF8
A
1547 1561Right-handed alpha
Helix 54
AF9
A
1569 1582Right-handed alpha
Helix 55
AG1
A
1600 1618Right-handed alpha
Helix 56
AG2
A
1639 1665Right-handed alpha
Helix 57
AG3
A
1668 1681Right-handed alpha
Helix 58
AG4
A
1683 1691Right-handed alpha
Helix 59
AG5
A
1695 1724Right-handed alpha
Helix 60
AG6
A
1735 1753Right-handed alpha
Helix 61
AG7
A
1765 1785Right-handed alpha
Helix 62
AG8
A
1797 1803Right-handed alpha
Helix 63
AG9
A
1804 1809Right-handed alpha
Helix 64
AH1
A
1815 1838Right-handed alpha
Helix 65
AH2
A
1850 1859Right-handed alpha
Helix 66
AH3
A
1861 1874Right-handed alpha
Helix 67
AH4
A
1953 1961Right-handed alpha
Helix 68
AH5
A
2002 2013Right-handed alpha
Helix 69
AH6
A
2019 2023Right-handed 310
Helix 70
AH7
A
2025 2030Right-handed alpha
Helix 71
AH8
A
2048 2060Right-handed alpha
Helix 72
AH9
A
2078 2093Right-handed alpha
Helix 73
AI1
A
2103 2111Right-handed alpha
Helix 74
AI2
A
2127 2135Right-handed alpha
Helix 75
AI3
A
2142 2149Right-handed alpha
Helix 76
AI4
A
2161 2170Right-handed alpha
Helix 77
AI5
A
2192 2206Right-handed alpha
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There are 8 sheets in PDB entry 5XJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
49 50first strand
Strand 2
A
628 629anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
158 161first strand
Strand 2
A
165 168anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
384 385first strand
Strand 2
A
535 537parallel
Strand 3
A
555 557anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
617 621first strand
Strand 2
A
1590 1594parallel
Strand 3
A
1533 1536anti-parallel
Strand 4
A
1391 1392parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
904 906first strand
Strand 2
A
921 923anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
977 978first strand
Strand 2
A
1055 1057parallel
Strand 3
A
1086 1087parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1101 1104first strand
Strand 2
A
1109 1113anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1183 1184first strand
Strand 2
A
1195 1196anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il