Analysis of interatomic Contacts of Structural Units in PDB entry:
5XVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XVN entry

There are 16 chains in PDB entry 5XVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ILE 288
B
MET 1ILE 288
C
MET 1ILE 288
D
MET 1ILE 288
E
TYR 5GLU 108
F
MET 1GLU 108
G
T 2 T 26
H
T 2 T 25
I
MET 1ILE 288
J
MET 1ILE 288
K
MET 1ILE 288
L
MET 1ILE 288
M
MET 1GLU 108
N
TYR 5GLU 108
O
T 2 C 27
P
T 2 T 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are103 helices in PDB entry 5XVN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
51 60Right-handed alpha
Helix 2
AA2
A
86 95Right-handed alpha
Helix 3
AA3
A
97 123Right-handed alpha
Helix 4
AA4
A
125 138Right-handed alpha
Helix 5
AA5
A
146 161Right-handed alpha
Helix 6
AA6
A
170 194Right-handed alpha
Helix 7
AA7
A
211 218Right-handed alpha
Helix 8
AA8
A
221 232Right-handed alpha
Helix 9
AA9
A
236 244Right-handed alpha
Helix 10
AB1
A
245 250Right-handed alpha
Helix 11
AB2
A
261 278Right-handed alpha
Helix 12
AB3
B
51 60Right-handed alpha
Helix 13
AB4
B
86 95Right-handed alpha
Helix 14
AB5
B
97 123Right-handed alpha
Helix 15
AB6
B
125 138Right-handed alpha
Helix 16
AB7
B
146 161Right-handed alpha
Helix 17
AB8
B
170 195Right-handed alpha
Helix 18
AB9
B
211 218Right-handed alpha
Helix 19
AC1
B
221 232Right-handed alpha
Helix 20
AC2
B
236 244Right-handed alpha
Helix 21
AC3
B
245 250Right-handed alpha
Helix 22
AC4
B
261 278Right-handed alpha
Helix 23
AC5
C
51 60Right-handed alpha
Helix 24
AC6
C
86 95Right-handed alpha
Helix 25
AC7
C
97 123Right-handed alpha
Helix 26
AC8
C
125 138Right-handed alpha
Helix 27
AC9
C
146 161Right-handed alpha
Helix 28
AD1
C
170 194Right-handed alpha
Helix 29
AD2
C
211 218Right-handed alpha
Helix 30
AD3
C
221 232Right-handed alpha
Helix 31
AD4
C
236 244Right-handed alpha
Helix 32
AD5
C
245 250Right-handed alpha
Helix 33
AD6
C
261 278Right-handed alpha
Helix 34
AD7
D
51 60Right-handed alpha
Helix 35
AD8
D
86 95Right-handed alpha
Helix 36
AD9
D
97 123Right-handed alpha
Helix 37
AE1
D
125 138Right-handed alpha
Helix 38
AE2
D
170 194Right-handed alpha
Helix 39
AE3
D
211 218Right-handed alpha
Helix 40
AE4
D
221 232Right-handed alpha
Helix 41
AE5
D
236 244Right-handed alpha
Helix 42
AE6
D
245 250Right-handed alpha
Helix 43
AE7
D
261 278Right-handed alpha
Helix 44
AE8
E
18 35Right-handed alpha
Helix 45
AE9
E
51 65Right-handed alpha
Helix 46
AF1
E
79 84Right-handed alpha
Helix 47
AF2
E
95 99Right-handed 310
Helix 48
AF3
F
18 35Right-handed alpha
Helix 49
AF4
F
51 65Right-handed alpha
Helix 50
AF5
F
78 84Right-handed alpha
Helix 51
AF6
F
95 99Right-handed 310
Helix 52
AF7
I
51 60Right-handed alpha
Helix 53
AF8
I
86 95Right-handed alpha
Helix 54
AF9
I
97 123Right-handed alpha
Helix 55
AG1
I
125 138Right-handed alpha
Helix 56
AG2
I
146 161Right-handed alpha
Helix 57
AG3
I
170 194Right-handed alpha
Helix 58
AG4
I
211 218Right-handed alpha
Helix 59
AG5
I
221 232Right-handed alpha
Helix 60
AG6
I
236 244Right-handed alpha
Helix 61
AG7
I
245 250Right-handed alpha
Helix 62
AG8
I
261 278Right-handed alpha
Helix 63
AG9
J
51 60Right-handed alpha
Helix 64
AH1
J
87 95Right-handed alpha
Helix 65
AH2
J
97 123Right-handed alpha
Helix 66
AH3
J
125 138Right-handed alpha
Helix 67
AH4
J
146 161Right-handed alpha
Helix 68
AH5
J
170 194Right-handed alpha
Helix 69
AH6
J
211 218Right-handed alpha
Helix 70
AH7
J
221 232Right-handed alpha
Helix 71
AH8
J
236 244Right-handed alpha
Helix 72
AH9
J
245 250Right-handed alpha
Helix 73
AI1
J
261 278Right-handed alpha
Helix 74
AI2
K
51 60Right-handed alpha
Helix 75
AI3
K
86 95Right-handed alpha
Helix 76
AI4
K
97 123Right-handed alpha
Helix 77
AI5
K
125 138Right-handed alpha
Helix 78
AI6
K
146 161Right-handed alpha
Helix 79
AI7
K
170 194Right-handed alpha
Helix 80
AI8
K
211 218Right-handed alpha
Helix 81
AI9
K
221 232Right-handed alpha
Helix 82
AJ1
K
236 244Right-handed alpha
Helix 83
AJ2
K
245 250Right-handed alpha
Helix 84
AJ3
K
261 278Right-handed alpha
Helix 85
AJ4
L
51 60Right-handed alpha
Helix 86
AJ5
L
86 95Right-handed alpha
Helix 87
AJ6
L
97 123Right-handed alpha
Helix 88
AJ7
L
125 138Right-handed alpha
Helix 89
AJ8
L
146 161Right-handed alpha
Helix 90
AJ9
L
170 194Right-handed alpha
Helix 91
AK1
L
211 218Right-handed alpha
Helix 92
AK2
L
221 232Right-handed alpha
Helix 93
AK3
L
236 244Right-handed alpha
Helix 94
AK4
L
245 250Right-handed alpha
Helix 95
AK5
L
261 278Right-handed alpha
Helix 96
AK6
M
18 35Right-handed alpha
Helix 97
AK7
M
51 65Right-handed alpha
Helix 98
AK8
M
78 84Right-handed alpha
Helix 99
AK9
M
95 99Right-handed 310
Helix 100
AL1
N
18 35Right-handed alpha
Helix 101
AL2
N
51 65Right-handed alpha
Helix 102
AL3
N
79 84Right-handed alpha
Helix 103
AL4
N
95 99Right-handed 310
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There are 20 sheets in PDB entry 5XVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 8first strand
Strand 2
A
37 42parallel
Strand 3
A
63 67parallel
Strand 4
A
73 79anti-parallel
Strand 5
B
73 79anti-parallel
Strand 6
B
63 67anti-parallel
Strand 7
B
37 42parallel
Strand 8
B
4 8parallel
Strand 9
E
103 106parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
28 33first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
12 17anti-parallel
Strand 4
A
47 50parallel
Strand 5
B
47 50anti-parallel
Strand 6
B
12 17parallel
Strand 7
B
20 24anti-parallel
Strand 8
B
29 33anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
251 254first strand
Strand 2
A
257 260anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
251 254first strand
Strand 2
B
257 260anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4 8first strand
Strand 2
C
37 42parallel
Strand 3
C
63 67parallel
Strand 4
C
73 79anti-parallel
Strand 5
D
73 79anti-parallel
Strand 6
D
63 67anti-parallel
Strand 7
D
37 42parallel
Strand 8
D
4 8parallel
Strand 9
F
103 106parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
29 33first strand
Strand 2
C
20 24anti-parallel
Strand 3
C
12 17anti-parallel
Strand 4
C
47 50parallel
Strand 5
D
47 50anti-parallel
Strand 6
D
12 17parallel
Strand 7
D
20 24anti-parallel
Strand 8
D
29 33anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
251 254first strand
Strand 2
C
257 260anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
251 254first strand
Strand 2
D
257 260anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
38 41first strand
Strand 2
E
44 49anti-parallel
Strand 3
E
6 13anti-parallel
Strand 4
E
71 78anti-parallel
Strand 5
F
86 89anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
86 89first strand
Strand 2
F
71 77anti-parallel
Strand 3
F
7 13anti-parallel
Strand 4
F
44 48anti-parallel
Strand 5
F
38 41anti-parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
4 8first strand
Strand 2
I
37 42parallel
Strand 3
I
63 67parallel
Strand 4
I
73 79anti-parallel
Strand 5
J
73 79anti-parallel
Strand 6
J
63 67anti-parallel
Strand 7
J
37 42parallel
Strand 8
J
4 8parallel
Strand 9
M
103 106parallel
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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
29 33first strand
Strand 2
I
20 24anti-parallel
Strand 3
I
12 17anti-parallel
Strand 4
I
47 50parallel
Strand 5
J
47 50anti-parallel
Strand 6
J
12 17parallel
Strand 7
J
20 24anti-parallel
Strand 8
J
29 33anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
251 254first strand
Strand 2
I
257 260anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
251 254first strand
Strand 2
J
257 260anti-parallel
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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
4 8first strand
Strand 2
K
37 42parallel
Strand 3
K
63 67parallel
Strand 4
K
73 79anti-parallel
Strand 5
L
73 79anti-parallel
Strand 6
L
63 67anti-parallel
Strand 7
L
37 42parallel
Strand 8
L
4 8parallel
Strand 9
N
103 106parallel
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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
29 33first strand
Strand 2
K
20 24anti-parallel
Strand 3
K
12 17anti-parallel
Strand 4
K
47 50parallel
Strand 5
L
47 50anti-parallel
Strand 6
L
12 17parallel
Strand 7
L
20 24anti-parallel
Strand 8
L
29 33anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
251 254first strand
Strand 2
K
257 260anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
251 254first strand
Strand 2
L
257 260anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
38 41first strand
Strand 2
M
44 49anti-parallel
Strand 3
M
6 13anti-parallel
Strand 4
M
71 77anti-parallel
Strand 5
N
86 89anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
86 89first strand
Strand 2
N
71 78anti-parallel
Strand 3
N
6 13anti-parallel
Strand 4
N
44 49anti-parallel
Strand 5
N
38 41anti-parallel
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