Analysis of interatomic Contacts of Structural Units in PDB entry:
5XVX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5XVX entry

There is 1 chain in PDB entry 5XVX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2TRP 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5XVX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 23Right-handed alpha
Helix 2
AA2
A
25 30Right-handed alpha
Helix 3
AA3
A
32 41Right-handed alpha
Helix 4
AA4
A
88 106Right-handed alpha
Helix 5
AA5
A
125 141Right-handed alpha
Helix 6
AA6
A
142 144Right-handed 310
Helix 7
AA7
A
158 174Right-handed alpha
Helix 8
AA8
A
195 213Right-handed alpha
Helix 9
AA9
A
230 243Right-handed alpha
Helix 10
AB1
A
266 279Right-handed alpha
Helix 11
AB2
A
282 286Right-handed 310
Helix 12
AB3
A
326 336Right-handed alpha
Helix 13
AB4
A
350 364Right-handed alpha
Helix 14
AB5
A
365 369Right-handed 310
Helix 15
AB6
A
374 379Right-handed alpha
Helix 16
AB7
A
380 396Right-handed alpha
Helix 17
AB8
A
400 427Right-handed alpha
Helix 18
AB9
A
436 456Right-handed alpha
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There are 3 sheets in PDB entry 5XVX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 54first strand
Strand 2
A
60 71anti-parallel
Strand 3
A
112 117anti-parallel
Strand 4
A
81 83parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
149 150parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 302first strand
Strand 2
A
255 259anti-parallel
Strand 3
A
246 251anti-parallel
Strand 4
A
223 226parallel
Strand 5
A
315 317parallel
Strand 6
A
340 342parallel
Strand 7
A
371 373parallel
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