Analysis of interatomic Contacts of Structural Units in PDB entry:
5XYM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5XYM entry

There are 31 chains in PDB entry 5XYM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
0	ALA 2	LYS 56
1	ILE 6	GLU 52
2	ALA 2	ALA 47
3	PRO 2	GLY 64
4	MET 1	GLY 37
A	A 6	A 3115
B	U 2	A 117
C	GLY 2	THR 274
D	ARG 3	ARG 214
E	THR 2	SER 209
F	PRO 9	PHE 184
G	SER 13	LYS 176
H	MET 1	ALA 39
J	PRO 2	GLN 147
K	MET 1	LEU 122
L	VAL 3	GLU 146
M	MET 1	GLU 135
N	PRO 2	ARG 117
O	ASN 9	PHE 127
P	ASN 2	LYS 112
Q	ALA 2	SER 125
R	THR 3	ILE 102
S	PHE 7	ARG 117
T	ILE 4	PHE 96
U	MET 1	ILE 105
V	ILE 7	GLU 183
W	SER 8	VAL 83
X	ALA 2	ARG 63
Y	THR 6	LEU 66
Z	ALA 2	VAL 59
a	ALA 2	ALA 24

There are 82 helices in PDB entry 5XYM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	0	9	18	Right-handed alpha
Helix 2	AA2	0	40	42	Right-handed 310
Helix 3	AA3	0	43	50	Right-handed alpha
Helix 4	AA4	2	11	20	Right-handed alpha
Helix 5	AA5	2	20	26	Right-handed alpha
Helix 6	AA6	2	27	41	Right-handed alpha
Helix 7	AA7	3	7	14	Right-handed alpha
Helix 8	AA8	3	37	44	Right-handed alpha
Helix 9	AA9	3	54	62	Right-handed alpha
Helix 10	AB1	C	200	204	Right-handed 310
Helix 11	AB2	C	208	215	Right-handed alpha
Helix 12	AB3	D	58	62	Right-handed 310
Helix 13	AB4	D	63	74	Right-handed alpha
Helix 14	AB5	D	89	95	Right-handed 310
Helix 15	AB6	D	102	107	Right-handed 310
Helix 16	AB7	D	126	131	Right-handed alpha
Helix 17	AB8	E	21	26	Right-handed alpha
Helix 18	AB9	E	30	46	Right-handed alpha
Helix 19	AC1	E	103	121	Right-handed alpha
Helix 20	AC2	E	137	148	Right-handed alpha
Helix 21	AC3	E	163	169	Right-handed alpha
Helix 22	AC4	E	184	191	Right-handed alpha
Helix 23	AC5	E	198	209	Right-handed alpha
Helix 24	AC6	F	11	17	Right-handed alpha
Helix 25	AC7	F	17	27	Right-handed alpha
Helix 26	AC8	F	47	55	Right-handed 310
Helix 27	AC9	F	56	68	Right-handed alpha
Helix 28	AD1	F	101	112	Right-handed alpha
Helix 29	AD2	F	141	145	Right-handed 310
Helix 30	AD3	F	169	180	Right-handed alpha
Helix 31	AD4	G	60	82	Right-handed alpha
Helix 32	AD5	G	138	151	Right-handed alpha
Helix 33	AD6	H	22	29	Right-handed alpha
Helix 34	AD7	H	29	34	Right-handed alpha
Helix 35	AD8	J	26	38	Right-handed alpha
Helix 36	AD9	J	67	72	Right-handed alpha
Helix 37	AE1	J	88	96	Right-handed alpha
Helix 38	AE2	J	96	109	Right-handed alpha
Helix 39	AE3	J	112	118	Right-handed alpha
Helix 40	AE4	K	104	110	Right-handed alpha
Helix 41	AE5	K	111	117	Right-handed alpha
Helix 42	AE6	L	5	9	Right-handed 310
Helix 43	AE7	L	56	61	Right-handed alpha
Helix 44	AE8	L	80	87	Right-handed alpha
Helix 45	AE9	L	96	102	Right-handed alpha
Helix 46	AF1	L	130	141	Right-handed alpha
Helix 47	AF2	M	44	59	Right-handed alpha
Helix 48	AF3	M	111	124	Right-handed alpha
Helix 49	AF4	N	13	32	Right-handed alpha
Helix 50	AF5	N	38	57	Right-handed alpha
Helix 51	AF6	N	59	68	Right-handed alpha
Helix 52	AF7	N	72	82	Right-handed alpha
Helix 53	AF8	N	82	87	Right-handed alpha
Helix 54	AF9	O	10	26	Right-handed alpha
Helix 55	AG1	O	78	96	Right-handed alpha
Helix 56	AG2	O	111	124	Right-handed alpha
Helix 57	AG3	P	52	55	Right-handed 310
Helix 58	AG4	P	77	81	Right-handed 310
Helix 59	AG5	P	98	103	Right-handed alpha
Helix 60	AG6	Q	10	21	Right-handed alpha
Helix 61	AG7	Q	26	31	Right-handed alpha
Helix 62	AG8	Q	31	72	Right-handed alpha
Helix 63	AG9	Q	75	87	Right-handed alpha
Helix 64	AH1	Q	91	102	Right-handed alpha
Helix 65	AH2	Q	105	116	Right-handed alpha
Helix 66	AH3	R	51	56	Right-handed 310
Helix 67	AH4	S	23	32	Right-handed alpha
Helix 68	AH5	S	35	45	Right-handed alpha
Helix 69	AH6	S	50	68	Right-handed alpha
Helix 70	AH7	T	7	12	Right-handed alpha
Helix 71	AH8	T	17	25	Right-handed alpha
Helix 72	AH9	T	38	51	Right-handed alpha
Helix 73	AI1	V	21	31	Right-handed alpha
Helix 74	AI2	V	51	62	Right-handed alpha
Helix 75	AI3	V	160	162	Right-handed 310
Helix 76	AI4	X	52	58	Right-handed alpha
Helix 77	AI5	Y	15	39	Right-handed alpha
Helix 78	AI6	Y	44	66	Right-handed alpha
Helix 79	AI7	Z	16	27	Right-handed alpha
Helix 80	AI8	Z	40	50	Right-handed alpha
Helix 81	AI9	a	3	10	Right-handed alpha
Helix 82	AJ1	a	11	14	Right-handed 310

There are 49 sheets in PDB entry 5XYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	9	12	first strand
Strand 2	1	22	25	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	24	25	first strand
Strand 2	3	47	48	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	17	18	first strand
Strand 2	4	23	24	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	5	first strand
Strand 2	C	17	18	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	37	first strand
Strand 2	C	60	63	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	117	118	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	92	96	anti-parallel
Strand 3	C	102	106	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	132	first strand
Strand 2	C	190	192	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	173	176	anti-parallel
Strand 3	C	182	185	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	116	first strand
Strand 2	D	205	209	anti-parallel
Strand 3	D	5	17	anti-parallel
Strand 4	D	23	30	anti-parallel
Strand 5	D	191	195	anti-parallel
Strand 6	D	182	186	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	85	first strand
Strand 2	D	49	56	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	100	101	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	167	168	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	8	first strand
Strand 2	E	124	127	parallel
Strand 3	E	193	196	parallel
Strand 4	E	154	157	parallel
Strand 5	E	175	178	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	73	76	first strand
Strand 2	F	91	98	anti-parallel
Strand 3	F	38	44	anti-parallel
Strand 4	F	160	165	anti-parallel
Strand 5	F	135	138	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	19	first strand
Strand 2	G	22	25	anti-parallel
Strand 3	G	33	35	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	128	first strand
Strand 2	G	131	136	anti-parallel
Strand 3	G	84	90	anti-parallel
Strand 4	G	163	164	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	96	first strand
Strand 2	G	107	108	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	36	37	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	122	124	first strand
Strand 2	J	53	57	parallel
Strand 3	J	15	19	parallel
Strand 4	J	138	139	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	75	77	first strand
Strand 2	J	84	86	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	8	first strand
Strand 2	K	19	24	anti-parallel
Strand 3	K	38	43	anti-parallel
Strand 4	K	57	64	anti-parallel
Strand 5	K	83	86	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	77	79	first strand
Strand 2	P	69	74	anti-parallel
Strand 3	P	57	61	anti-parallel
Strand 4	P	37	49	anti-parallel
Strand 5	P	24	32	anti-parallel
Strand 6	P	82	87	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	102	103	first strand
Strand 2	K	121	122	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	76	79	first strand
Strand 2	L	110	113	parallel
Strand 3	L	128	129	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	123	125	first strand
Strand 2	L	143	145	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	102	106	first strand
Strand 2	M	32	36	anti-parallel
Strand 3	M	129	133	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	40	43	first strand
Strand 2	M	94	97	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	75	76	first strand
Strand 2	M	89	90	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	33	37	first strand
Strand 2	N	109	115	anti-parallel
Strand 3	N	95	102	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	58	64	first strand
Strand 2	O	47	53	anti-parallel
Strand 3	O	37	42	anti-parallel
Strand 4	O	101	102	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	13	17	first strand
Strand 2	R	4	8	anti-parallel
Strand 3	R	39	43	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	22	25	first strand
Strand 2	R	93	97	anti-parallel
Strand 3	R	60	69	anti-parallel
Strand 4	R	34	37	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	73	78	first strand
Strand 2	R	85	90	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	9	17	first strand
Strand 2	S	108	115	anti-parallel
Strand 3	S	77	85	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	93	94	first strand
Strand 2	S	100	101	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	28	31	first strand
Strand 2	T	79	85	anti-parallel
Strand 3	T	59	62	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	66	67	first strand
Strand 2	T	74	75	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	66	67	first strand
Strand 2	U	32	35	anti-parallel
Strand 3	U	20	27	anti-parallel
Strand 4	U	8	11	anti-parallel
Strand 5	U	71	73	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	40	41	first strand
Strand 2	U	62	63	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	83	84	first strand
Strand 2	U	97	98	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	45	50	first strand
Strand 2	V	32	38	anti-parallel
Strand 3	V	92	99	parallel
Strand 4	V	75	85	anti-parallel
Strand 5	V	66	70	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	129	132	first strand
Strand 2	V	108	115	anti-parallel
Strand 3	V	144	147	parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	122	125	first strand
Strand 2	V	177	182	anti-parallel
Strand 3	V	157	158	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	46	47	first strand
Strand 2	W	75	78	parallel
Strand 3	W	70	72	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	51	53	first strand
Strand 2	W	59	61	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	66	67	first strand
Strand 2	W	80	81	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	13	16	first strand
Strand 2	X	26	29	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	34	38	first strand
Strand 2	X	47	51	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	35	38	first strand
Strand 2	Z	3	7	anti-parallel
Strand 3	Z	55	57	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5XYM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5XYM