Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y0O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y0O entry

There are 2 chains in PDB entry 5Y0O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 414
B
 MET 1ASN 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 5Y0O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 29Right-handed alpha
Helix 2
AA2
A
51 62Right-handed alpha
Helix 3
AA3
A
71 76Right-handed alpha
Helix 4
AA4
A
78 93Right-handed alpha
Helix 5
AA5
A
106 133Right-handed alpha
Helix 6
AA6
A
137 149Right-handed alpha
Helix 7
AA7
A
162 177Right-handed alpha
Helix 8
AA8
A
206 215Right-handed alpha
Helix 9
AA9
A
222 226Right-handed 310
Helix 10
AB1
A
227 241Right-handed alpha
Helix 11
AB2
A
246 249Right-handed 310
Helix 12
AB3
A
250 260Right-handed alpha
Helix 13
AB4
A
262 268Right-handed alpha
Helix 14
AB5
A
275 286Right-handed alpha
Helix 15
AB6
A
289 298Right-handed alpha
Helix 16
AB7
A
303 317Right-handed alpha
Helix 17
AB8
A
319 328Right-handed alpha
Helix 18
AB9
A
341 352Right-handed alpha
Helix 19
AC1
A
353 355Right-handed 310
Helix 20
AC2
A
362 366Right-handed 310
Helix 21
AC3
A
368 382Right-handed alpha
Helix 22
AC4
A
388 395Right-handed alpha
Helix 23
AC5
A
396 398Right-handed 310
Helix 24
AC6
B
14 29Right-handed alpha
Helix 25
AC7
B
51 61Right-handed alpha
Helix 26
AC8
B
71 76Right-handed alpha
Helix 27
AC9
B
78 93Right-handed alpha
Helix 28
AD1
B
107 133Right-handed alpha
Helix 29
AD2
B
137 148Right-handed alpha
Helix 30
AD3
B
161 177Right-handed alpha
Helix 31
AD4
B
206 216Right-handed alpha
Helix 32
AD5
B
219 226Right-handed 310
Helix 33
AD6
B
227 242Right-handed alpha
Helix 34
AD7
B
246 249Right-handed 310
Helix 35
AD8
B
250 260Right-handed alpha
Helix 36
AD9
B
262 268Right-handed alpha
Helix 37
AE1
B
276 286Right-handed alpha
Helix 38
AE2
B
289 298Right-handed alpha
Helix 39
AE3
B
303 317Right-handed alpha
Helix 40
AE4
B
319 329Right-handed alpha
Helix 41
AE5
B
341 352Right-handed alpha
Helix 42
AE6
B
353 355Right-handed 310
Helix 43
AE7
B
368 382Right-handed alpha
Helix 44
AE8
B
389 395Right-handed alpha
Helix 45
AE9
B
395 400Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5Y0O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 186first strand
Strand 2
A
97 102parallel
Strand 3
A
3 8parallel
Strand 4
A
32 38parallel
Strand 5
A
66 70parallel
Strand 6
A
335 340anti-parallel
Strand 7
A
359 360parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 186first strand
Strand 2
A
97 102parallel
Strand 3
A
3 8parallel
Strand 4
A
32 38parallel
Strand 5
A
66 70parallel
Strand 6
A
335 340anti-parallel
Strand 7
A
403 406parallel
Strand 8
A
411 412anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 186first strand
Strand 2
B
97 102parallel
Strand 3
B
3 8parallel
Strand 4
B
32 38parallel
Strand 5
B
66 70parallel
Strand 6
B
335 340anti-parallel
Strand 7
B
359 360parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 186first strand
Strand 2
B
97 102parallel
Strand 3
B
3 8parallel
Strand 4
B
32 38parallel
Strand 5
B
66 70parallel
Strand 6
B
335 340anti-parallel
Strand 7
B
403 406parallel
Strand 8
B
411 412anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il