Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y1Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y1Z entry

There are 4 chains in PDB entry 5Y1Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LEU 133
B
GLY -1LEU 133
C
ASN 87LYS 390
D
GLY 85ILE 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5Y1Z. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
49 55Right-handed alpha
Helix 3
AA3
A
56 58Right-handed 310
Helix 4
AA4
A
91 100Right-handed alpha
Helix 5
AA5
A
101 109Right-handed alpha
Helix 6
AA6
A
120 124Right-handed 310
Helix 7
AA7
A
125 133Right-handed alpha
Helix 8
AA8
B
9 22Right-handed alpha
Helix 9
AA9
B
49 55Right-handed alpha
Helix 10
AB1
B
56 58Right-handed 310
Helix 11
AB2
B
91 100Right-handed alpha
Helix 12
AB3
B
101 109Right-handed alpha
Helix 13
AB4
B
120 124Right-handed 310
Helix 14
AB5
B
125 133Right-handed alpha
Helix 15
AB6
C
112 116Right-handed 310
Helix 16
AB7
C
127 137Right-handed alpha
Helix 17
AB8
C
138 142Right-handed 310
Helix 18
AB9
C
143 148Right-handed alpha
Helix 19
AC1
C
150 166Right-handed alpha
Helix 20
AC2
C
170 174Right-handed 310
Helix 21
AC3
C
184 188Right-handed 310
Helix 22
AC4
C
194 204Right-handed alpha
Helix 23
AC5
C
209 229Right-handed alpha
Helix 24
AC6
C
232 255Right-handed alpha
Helix 25
AC7
C
255 265Right-handed alpha
Helix 26
AC8
C
268 272Right-handed 310
Helix 27
AC9
C
319 321Right-handed 310
Helix 28
AD1
C
335 358Right-handed alpha
Helix 29
AD2
C
374 378Right-handed 310
Helix 30
AD3
C
383 387Right-handed 310
Helix 31
AD4
D
111 116Right-handed 310
Helix 32
AD5
D
127 138Right-handed alpha
Helix 33
AD6
D
143 148Right-handed alpha
Helix 34
AD7
D
150 166Right-handed alpha
Helix 35
AD8
D
170 174Right-handed 310
Helix 36
AD9
D
182 188Right-handed 310
Helix 37
AE1
D
194 204Right-handed alpha
Helix 38
AE2
D
209 229Right-handed alpha
Helix 39
AE3
D
232 255Right-handed alpha
Helix 40
AE4
D
255 265Right-handed alpha
Helix 41
AE5
D
268 272Right-handed 310
Helix 42
AE6
D
332 334Right-handed 310
Helix 43
AE7
D
335 358Right-handed alpha
Helix 44
AE8
D
374 378Right-handed 310
Helix 45
AE9
D
383 387Right-handed 310
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There are 6 sheets in PDB entry 5Y1Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
41 47first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
63 70anti-parallel
Strand 4
A
79 86anti-parallel
Strand 5
A
114 118parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
41 47first strand
Strand 2
B
29 34anti-parallel
Strand 3
B
63 71anti-parallel
Strand 4
B
78 86anti-parallel
Strand 5
B
114 118parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
101 102first strand
Strand 2
C
109 110anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
313 317first strand
Strand 2
C
302 307anti-parallel
Strand 3
C
291 299anti-parallel
Strand 4
C
280 283anti-parallel
Strand 5
C
322 323anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
101 102first strand
Strand 2
D
109 110anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
313 317first strand
Strand 2
D
302 307anti-parallel
Strand 3
D
291 299anti-parallel
Strand 4
D
280 283anti-parallel
Strand 5
D
321 323anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il