Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y36


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y36 entry

There are 4 chains in PDB entry 5Y36 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ASP 1368
B
G -2 U 97
C
A 1 T 41
D
A 15 T 55
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 5Y36. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
58 94Right-handed alpha
Helix 2
AA2
A
96 103Right-handed alpha
Helix 3
AA3
A
107 111Right-handed 310
Helix 4
AA4
A
121 126Right-handed alpha
Helix 5
AA5
A
134 144Right-handed alpha
Helix 6
AA6
A
150 164Right-handed alpha
Helix 7
AA7
A
181 196Right-handed alpha
Helix 8
AA8
A
207 214Right-handed alpha
Helix 9
AA9
A
217 229Right-handed alpha
Helix 10
AB1
A
236 246Right-handed alpha
Helix 11
AB2
A
270 283Right-handed alpha
Helix 12
AB3
A
286 306Right-handed alpha
Helix 13
AB4
A
315 343Right-handed alpha
Helix 14
AB5
A
346 352Right-handed alpha
Helix 15
AB6
A
353 357Right-handed 310
Helix 16
AB7
A
358 365Right-handed alpha
Helix 17
AB8
A
368 383Right-handed alpha
Helix 18
AB9
A
386 396Right-handed alpha
Helix 19
AC1
A
404 408Right-handed 310
Helix 20
AC2
A
411 426Right-handed alpha
Helix 21
AC3
A
431 446Right-handed alpha
Helix 22
AC4
A
477 482Right-handed alpha
Helix 23
AC5
A
483 495Right-handed alpha
Helix 24
AC6
A
512 526Right-handed alpha
Helix 25
AC7
A
541 552Right-handed alpha
Helix 26
AC8
A
560 567Right-handed alpha
Helix 27
AC9
A
567 572Right-handed alpha
Helix 28
AD1
A
592 602Right-handed alpha
Helix 29
AD2
A
611 626Right-handed alpha
Helix 30
AD3
A
628 639Right-handed alpha
Helix 31
AD4
A
644 652Right-handed alpha
Helix 32
AD5
A
663 669Right-handed alpha
Helix 33
AD6
A
678 685Right-handed alpha
Helix 34
AD7
A
692 699Right-handed alpha
Helix 35
AD8
A
704 711Right-handed alpha
Helix 36
AD9
A
719 724Right-handed alpha
Helix 37
AE1
A
730 751Right-handed alpha
Helix 38
AE2
A
776 792Right-handed alpha
Helix 39
AE3
A
794 799Right-handed alpha
Helix 40
AE4
A
808 818Right-handed alpha
Helix 41
AE5
A
829 833Right-handed 310
Helix 42
AE6
A
851 853Right-handed 310
Helix 43
AE7
A
861 865Right-handed 310
Helix 44
AE8
A
872 889Right-handed alpha
Helix 45
AE9
A
893 899Right-handed alpha
Helix 46
AF1
A
901 906Right-handed alpha
Helix 47
AF2
A
910 917Right-handed 310
Helix 48
AF3
A
927 940Right-handed alpha
Helix 49
AF4
A
959 962Right-handed 310
Helix 50
AF5
A
963 970Right-handed alpha
Helix 51
AF6
A
975 979Right-handed 310
Helix 52
AF7
A
981 1000Right-handed alpha
Helix 53
AF8
A
1019 1022Right-handed 310
Helix 54
AF9
A
1023 1029Right-handed alpha
Helix 55
AG1
A
1037 1047Right-handed alpha
Helix 56
AG2
A
1078 1088Right-handed alpha
Helix 57
AG3
A
1168 1175Right-handed alpha
Helix 58
AG4
A
1177 1186Right-handed alpha
Helix 59
AG5
A
1191 1195Right-handed 310
Helix 60
AG6
A
1230 1242Right-handed alpha
Helix 61
AG7
A
1249 1262Right-handed alpha
Helix 62
AG8
A
1264 1281Right-handed alpha
Helix 63
AG9
A
1286 1297Right-handed alpha
Helix 64
AH1
A
1301 1310Right-handed alpha
Helix 65
AH2
A
1311 1317Right-handed 310
Helix 66
AH3
A
1341 1343Right-handed 310
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There are 8 sheets in PDB entry 5Y36. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
955 957first strand
Strand 2
A
756 763parallel
Strand 3
A
5 11parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
49 52anti-parallel
Strand 6
A
1093 1096parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
29 31first strand
Strand 2
A
44 46anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
35 36first strand
Strand 2
A
1357 1359parallel
Strand 3
A
1345 1350anti-parallel
Strand 4
A
1203 1206anti-parallel
Strand 5
A
1210 1214anti-parallel
Strand 6
A
1220 1221anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
538 539first strand
Strand 2
A
528 530anti-parallel
Strand 3
A
579 581anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
838 840first strand
Strand 2
A
855 857anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1107 1110first strand
Strand 2
A
1134 1135anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1161 1167first strand
Strand 2
A
1139 1146anti-parallel
Strand 3
A
1196 1198anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1150 1151first strand
Strand 2
A
1156 1157anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il