Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y3R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y3R entry

There are 6 chains in PDB entry 5Y3R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 34TYR 534
B
 ASN 6GLU 541
K
 ALA 11ALA 25
D
 T -15 C 18
E
 C 16 A 51
C
 CYS 10MET 4128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are245 helices in PDB entry 5Y3R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 77Right-handed alpha
Helix 2
AA2
A
112 120Right-handed alpha
Helix 3
AA3
A
121 123Right-handed 310
Helix 4
AA4
A
124 136Right-handed alpha
Helix 5
AA5
A
142 155Right-handed alpha
Helix 6
AA6
A
179 196Right-handed alpha
Helix 7
AA7
A
207 211Right-handed 310
Helix 8
AA8
A
239 248Right-handed alpha
Helix 9
AA9
A
330 338Right-handed alpha
Helix 10
AB1
A
354 356Right-handed 310
Helix 11
AB2
A
379 392Right-handed alpha
Helix 12
AB3
A
439 444Right-handed alpha
Helix 13
AB4
A
455 470Right-handed alpha
Helix 14
AB5
A
480 496Right-handed alpha
Helix 15
AB6
A
510 518Right-handed alpha
Helix 16
AB7
A
521 530Right-handed alpha
Helix 17
AB8
B
29 47Right-handed alpha
Helix 18
AB9
B
87 98Right-handed alpha
Helix 19
AC1
B
106 123Right-handed alpha
Helix 20
AC2
B
146 157Right-handed alpha
Helix 21
AC3
B
193 198Right-handed 310
Helix 22
AC4
B
199 216Right-handed alpha
Helix 23
AC5
B
217 222Right-handed 310
Helix 24
AC6
B
228 233Right-handed alpha
Helix 25
AC7
B
234 238Right-handed 310
Helix 26
AC8
B
285 289Right-handed 310
Helix 27
AC9
B
325 332Right-handed alpha
Helix 28
AD1
B
371 386Right-handed alpha
Helix 29
AD2
B
426 430Right-handed 310
Helix 30
AD3
B
447 461Right-handed alpha
Helix 31
AD4
B
484 500Right-handed alpha
Helix 32
AD5
B
510 517Right-handed alpha
Helix 33
AD6
B
519 537Right-handed alpha
Helix 34
AD7
K
12 25Right-handed alpha
Helix 35
AD8
C
11 23Right-handed alpha
Helix 36
AD9
C
24 27Right-handed 310
Helix 37
AE1
C
28 45Right-handed alpha
Helix 38
AE2
C
49 73Right-handed alpha
Helix 39
AE3
C
75 94Right-handed alpha
Helix 40
AE4
C
100 121Right-handed alpha
Helix 41
AE5
C
125 139Right-handed alpha
Helix 42
AE6
C
147 161Right-handed alpha
Helix 43
AE7
C
171 177Right-handed alpha
Helix 44
AE8
C
186 208Right-handed alpha
Helix 45
AE9
C
216 233Right-handed alpha
Helix 46
AF1
C
239 252Right-handed alpha
Helix 47
AF2
C
261 274Right-handed alpha
Helix 48
AF3
C
286 304Right-handed alpha
Helix 49
AF4
C
309 330Right-handed alpha
Helix 50
AF5
C
335 355Right-handed alpha
Helix 51
AF6
C
359 371Right-handed alpha
Helix 52
AF7
C
386 397Right-handed alpha
Helix 53
AF8
C
398 401Right-handed 310
Helix 54
AF9
C
408 424Right-handed alpha
Helix 55
AG1
C
431 443Right-handed alpha
Helix 56
AG2
C
452 472Right-handed alpha
Helix 57
AG3
C
474 490Right-handed alpha
Helix 58
AG4
C
529 540Right-handed alpha
Helix 59
AG5
C
544 565Right-handed alpha
Helix 60
AG6
C
567 584Right-handed alpha
Helix 61
AG7
C
586 597Right-handed alpha
Helix 62
AG8
C
606 621Right-handed alpha
Helix 63
AG9
C
638 649Right-handed alpha
Helix 64
AH1
C
650 652Right-handed 310
Helix 65
AH2
C
658 667Right-handed alpha
Helix 66
AH3
C
670 682Right-handed alpha
Helix 67
AH4
C
701 710Right-handed alpha
Helix 68
AH5
C
710 721Right-handed alpha
Helix 69
AH6
C
725 736Right-handed alpha
Helix 70
AH7
C
736 741Right-handed alpha
Helix 71
AH8
C
750 763Right-handed alpha
Helix 72
AH9
C
767 783Right-handed alpha
Helix 73
AI1
C
788 805Right-handed alpha
Helix 74
AI2
C
847 863Right-handed alpha
Helix 75
AI3
C
868 875Right-handed alpha
Helix 76
AI4
C
883 889Right-handed alpha
Helix 77
AI5
C
909 919Right-handed alpha
Helix 78
AI6
C
921 924Right-handed 310
Helix 79
AI7
C
925 946Right-handed alpha
Helix 80
AI8
C
950 966Right-handed alpha
Helix 81
AI9
C
966 977Right-handed alpha
Helix 82
AJ1
C
977 998Right-handed alpha
Helix 83
AJ2
C
1001 1013Right-handed alpha
Helix 84
AJ3
C
1022 1042Right-handed alpha
Helix 85
AJ4
C
1045 1051Right-handed alpha
Helix 86
AJ5
C
1055 1069Right-handed alpha
Helix 87
AJ6
C
1072 1074Right-handed 310
Helix 88
AJ7
C
1075 1090Right-handed alpha
Helix 89
AJ8
C
1096 1116Right-handed alpha
Helix 90
AJ9
C
1122 1133Right-handed alpha
Helix 91
AK1
C
1148 1157Right-handed alpha
Helix 92
AK2
C
1164 1176Right-handed alpha
Helix 93
AK3
C
1216 1219Right-handed 310
Helix 94
AK4
C
1220 1227Right-handed alpha
Helix 95
AK5
C
1237 1245Right-handed alpha
Helix 96
AK6
C
1247 1251Right-handed 310
Helix 97
AK7
C
1256 1270Right-handed alpha
Helix 98
AK8
C
1278 1282Right-handed 310
Helix 99
AK9
C
1292 1308Right-handed alpha
Helix 100
AL1
C
1324 1351Right-handed alpha
Helix 101
AL2
C
1364 1373Right-handed alpha
Helix 102
AL3
C
1376 1382Right-handed alpha
Helix 103
AL4
C
1384 1389Right-handed 310
Helix 104
AL5
C
1394 1406Right-handed alpha
Helix 105
AL6
C
1411 1422Right-handed alpha
Helix 106
AL7
C
1424 1438Right-handed alpha
Helix 107
AL8
C
1441 1462Right-handed alpha
Helix 108
AL9
C
1473 1486Right-handed alpha
Helix 109
AM1
C
1487 1489Right-handed 310
Helix 110
AM2
C
1493 1508Right-handed alpha
Helix 111
AM3
C
1513 1525Right-handed alpha
Helix 112
AM4
C
1549 1560Right-handed alpha
Helix 113
AM5
C
1560 1566Right-handed alpha
Helix 114
AM6
C
1566 1577Right-handed alpha
Helix 115
AM7
C
1580 1590Right-handed alpha
Helix 116
AM8
C
1592 1609Right-handed alpha
Helix 117
AM9
C
1635 1646Right-handed alpha
Helix 118
AN1
C
1646 1656Right-handed alpha
Helix 119
AN2
C
1672 1696Right-handed alpha
Helix 120
AN3
C
1710 1718Right-handed alpha
Helix 121
AN4
C
1724 1729Right-handed alpha
Helix 122
AN5
C
1739 1755Right-handed alpha
Helix 123
AN6
C
1802 1807Right-handed alpha
Helix 124
AN7
C
1813 1821Right-handed alpha
Helix 125
AN8
C
1857 1872Right-handed alpha
Helix 126
AN9
C
1878 1892Right-handed alpha
Helix 127
AO1
C
1895 1912Right-handed alpha
Helix 128
AO2
C
1913 1928Right-handed alpha
Helix 129
AO3
C
1934 1951Right-handed alpha
Helix 130
AO4
C
1956 1965Right-handed alpha
Helix 131
AO5
C
1978 1999Right-handed alpha
Helix 132
AO6
C
2014 2021Right-handed alpha
Helix 133
AO7
C
2035 2042Right-handed alpha
Helix 134
AO8
C
2042 2056Right-handed alpha
Helix 135
AO9
C
2058 2064Right-handed alpha
Helix 136
AP1
C
2072 2076Right-handed 310
Helix 137
AP2
C
2085 2090Right-handed alpha
Helix 138
AP3
C
2093 2108Right-handed alpha
Helix 139
AP4
C
2117 2121Right-handed 310
Helix 140
AP5
C
2137 2151Right-handed alpha
Helix 141
AP6
C
2156 2166Right-handed alpha
Helix 142
AP7
C
2169 2174Right-handed alpha
Helix 143
AP8
C
2180 2192Right-handed alpha
Helix 144
AP9
C
2193 2196Right-handed 310
Helix 145
AQ1
C
2197 2198Right-handed 310
Helix 146
AQ2
C
2199 2205Right-handed alpha
Helix 147
AQ3
C
2210 2230Right-handed alpha
Helix 148
AQ4
C
2232 2246Right-handed alpha
Helix 149
AQ5
C
2252 2261Right-handed alpha
Helix 150
AQ6
C
2269 2282Right-handed alpha
Helix 151
AQ7
C
2298 2309Right-handed alpha
Helix 152
AQ8
C
2314 2332Right-handed alpha
Helix 153
AQ9
C
2335 2356Right-handed alpha
Helix 154
AR1
C
2357 2369Right-handed alpha
Helix 155
AR2
C
2375 2393Right-handed alpha
Helix 156
AR3
C
2398 2409Right-handed alpha
Helix 157
AR4
C
2412 2414Right-handed 310
Helix 158
AR5
C
2415 2420Right-handed alpha
Helix 159
AR6
C
2421 2427Right-handed 310
Helix 160
AR7
C
2430 2432Right-handed 310
Helix 161
AR8
C
2433 2439Right-handed alpha
Helix 162
AR9
C
2449 2456Right-handed alpha
Helix 163
AS1
C
2467 2484Right-handed alpha
Helix 164
AS2
C
2492 2509Right-handed alpha
Helix 165
AS3
C
2515 2529Right-handed alpha
Helix 166
AS4
C
2535 2543Right-handed alpha
Helix 167
AS5
C
2544 2550Right-handed 310
Helix 168
AS6
C
2553 2567Right-handed alpha
Helix 169
AS7
C
2775 2783Right-handed alpha
Helix 170
AS8
C
2790 2801Right-handed alpha
Helix 171
AS9
C
2806 2815Right-handed alpha
Helix 172
AT1
C
2818 2823Right-handed alpha
Helix 173
AT2
C
2826 2847Right-handed alpha
Helix 174
AT3
C
2851 2863Right-handed alpha
Helix 175
AT4
C
2866 2871Right-handed alpha
Helix 176
AT5
C
2873 2878Right-handed alpha
Helix 177
AT6
C
2882 2884Right-handed 310
Helix 178
AT7
C
2885 2896Right-handed alpha
Helix 179
AT8
C
2900 2904Right-handed 310
Helix 180
AT9
C
2911 2924Right-handed alpha
Helix 181
AU1
C
2927 2937Right-handed alpha
Helix 182
AU2
C
2937 2942Right-handed alpha
Helix 183
AU3
C
2945 2958Right-handed alpha
Helix 184
AU4
C
2963 2975Right-handed alpha
Helix 185
AU5
C
2977 2982Right-handed alpha
Helix 186
AU6
C
2989 3007Right-handed alpha
Helix 187
AU7
C
3008 3019Right-handed alpha
Helix 188
AU8
C
3024 3029Right-handed alpha
Helix 189
AU9
C
3036 3039Right-handed 310
Helix 190
AV1
C
3040 3053Right-handed alpha
Helix 191
AV2
C
3058 3068Right-handed alpha
Helix 192
AV3
C
3070 3075Right-handed alpha
Helix 193
AV4
C
3076 3083Right-handed alpha
Helix 194
AV5
C
3084 3094Right-handed alpha
Helix 195
AV6
C
3097 3116Right-handed alpha
Helix 196
AV7
C
3125 3151Right-handed alpha
Helix 197
AV8
C
3161 3168Right-handed alpha
Helix 198
AV9
C
3175 3197Right-handed alpha
Helix 199
AW1
C
3228 3250Right-handed alpha
Helix 200
AW2
C
3252 3266Right-handed alpha
Helix 201
AW3
C
3268 3289Right-handed alpha
Helix 202
AW4
C
3295 3302Right-handed alpha
Helix 203
AW5
C
3308 3312Right-handed 310
Helix 204
AW6
C
3317 3335Right-handed alpha
Helix 205
AW7
C
3339 3344Right-handed alpha
Helix 206
AW8
C
3347 3358Right-handed alpha
Helix 207
AW9
C
3374 3403Right-handed alpha
Helix 208
AX1
C
3408 3430Right-handed alpha
Helix 209
AX2
C
3432 3440Right-handed alpha
Helix 210
AX3
C
3442 3448Right-handed alpha
Helix 211
AX4
C
3449 3451Right-handed 310
Helix 212
AX5
C
3458 3472Right-handed alpha
Helix 213
AX6
C
3477 3490Right-handed alpha
Helix 214
AX7
C
3491 3497Right-handed 310
Helix 215
AX8
C
3498 3506Right-handed alpha
Helix 216
AX9
C
3516 3525Right-handed alpha
Helix 217
AY1
C
3531 3543Right-handed alpha
Helix 218
AY2
C
3548 3564Right-handed alpha
Helix 219
AY3
C
3566 3576Right-handed alpha
Helix 220
AY4
C
3581 3596Right-handed alpha
Helix 221
AY5
C
3602 3612Right-handed alpha
Helix 222
AY6
C
3622 3629Right-handed alpha
Helix 223
AY7
C
3630 3636Right-handed alpha
Helix 224
AY8
C
3638 3655Right-handed alpha
Helix 225
AY9
C
3658 3673Right-handed alpha
Helix 226
AZ1
C
3682 3687Right-handed alpha
Helix 227
AZ2
C
3693 3698Right-handed alpha
Helix 228
AZ3
C
3759 3778Right-handed alpha
Helix 229
AZ4
C
3778 3784Right-handed alpha
Helix 230
AZ5
C
3812 3824Right-handed alpha
Helix 231
AZ6
C
3833 3847Right-handed alpha
Helix 232
AZ7
C
3860 3891Right-handed alpha
Helix 233
AZ8
C
3893 3918Right-handed alpha
Helix 234
AZ9
C
3947 3952Right-handed alpha
Helix 235
BA1
C
3964 3972Right-handed alpha
Helix 236
BA2
C
3975 3992Right-handed alpha
Helix 237
BA3
C
3995 4008Right-handed alpha
Helix 238
BA4
C
4013 4023Right-handed alpha
Helix 239
BA5
C
4026 4036Right-handed alpha
Helix 240
BA6
C
4041 4054Right-handed alpha
Helix 241
BA7
C
4058 4068Right-handed alpha
Helix 242
BA8
C
4073 4081Right-handed alpha
Helix 243
BA9
C
4087 4093Right-handed alpha
Helix 244
BB1
C
4100 4111Right-handed alpha
Helix 245
BB2
C
4113 4118Right-handed alpha
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There are 12 sheets in PDB entry 5Y3R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 109first strand
Strand 2
A
82 88anti-parallel
Strand 3
A
37 42parallel
Strand 4
A
165 169parallel
Strand 5
A
199 201parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 262first strand
Strand 2
A
268 272anti-parallel
Strand 3
A
369 370anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
286 289anti-parallel
Strand 3
B
311 316anti-parallel
Strand 4
B
319 321anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
310 311anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 321first strand
Strand 2
A
326 329anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
394 400anti-parallel
Strand 3
A
409 416anti-parallel
Strand 4
A
431 436anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
51 59anti-parallel
Strand 3
B
7 15parallel
Strand 4
B
129 135parallel
Strand 5
B
159 164parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
247 253first strand
Strand 2
B
257 263anti-parallel
Strand 3
B
357 366anti-parallel
Strand 4
B
418 423anti-parallel
Strand 5
B
405 411anti-parallel
Strand 6
B
389 396anti-parallel
Strand 7
B
339 347anti-parallel
Strand 8
B
247 253parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 296first strand
Strand 2
B
304 305anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 467first strand
Strand 2
B
472 475anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3727 3728first strand
Strand 2
C
3736 3741anti-parallel
Strand 3
C
3747 3753anti-parallel
Strand 4
C
3800 3803anti-parallel
Strand 5
C
3793 3797anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3809 3811first strand
Strand 2
C
3928 3931anti-parallel
Strand 3
C
3936 3939anti-parallel
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