Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y3S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y3S entry

There are 4 chains in PDB entry 5Y3S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 792PRO 989
B
 VAL 790ARG 987
C
 SER 787ARG 987
D
 VAL 788ARG 986
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5Y3S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
793 805Right-handed alpha
Helix 2
AA2
A
821 834Right-handed alpha
Helix 3
AA3
A
850 861Right-handed alpha
Helix 4
AA4
A
877 890Right-handed alpha
Helix 5
AA5
A
907 909Right-handed 310
Helix 6
AA6
A
910 919Right-handed alpha
Helix 7
AA7
A
935 947Right-handed alpha
Helix 8
AA8
A
964 978Right-handed alpha
Helix 9
AA9
B
793 805Right-handed alpha
Helix 10
AB1
B
821 834Right-handed alpha
Helix 11
AB2
B
850 861Right-handed alpha
Helix 12
AB3
B
877 890Right-handed alpha
Helix 13
AB4
B
907 909Right-handed 310
Helix 14
AB5
B
910 921Right-handed alpha
Helix 15
AB6
B
935 948Right-handed alpha
Helix 16
AB7
B
964 978Right-handed alpha
Helix 17
AB8
C
794 807Right-handed alpha
Helix 18
AB9
C
821 834Right-handed alpha
Helix 19
AC1
C
850 861Right-handed alpha
Helix 20
AC2
C
877 890Right-handed alpha
Helix 21
AC3
C
907 909Right-handed 310
Helix 22
AC4
C
910 921Right-handed alpha
Helix 23
AC5
C
935 948Right-handed alpha
Helix 24
AC6
C
964 978Right-handed alpha
Helix 25
AC7
D
793 804Right-handed alpha
Helix 26
AC8
D
805 807Right-handed 310
Helix 27
AC9
D
821 834Right-handed alpha
Helix 28
AD1
D
850 861Right-handed alpha
Helix 29
AD2
D
877 890Right-handed alpha
Helix 30
AD3
D
907 909Right-handed 310
Helix 31
AD4
D
910 921Right-handed alpha
Helix 32
AD5
D
935 947Right-handed alpha
Helix 33
AD6
D
964 978Right-handed alpha
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There are 4 sheets in PDB entry 5Y3S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
982 984first strand
Strand 2
A
955 957parallel
Strand 3
A
926 928parallel
Strand 4
A
898 900parallel
Strand 5
A
869 871parallel
Strand 6
A
841 843parallel
Strand 7
A
812 814parallel
Strand 8
B
807 808anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
812 814first strand
Strand 2
B
841 843parallel
Strand 3
B
869 871parallel
Strand 4
B
898 900parallel
Strand 5
B
926 928parallel
Strand 6
B
955 957parallel
Strand 7
B
982 984parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
812 814first strand
Strand 2
C
841 843parallel
Strand 3
C
869 871parallel
Strand 4
C
898 900parallel
Strand 5
C
926 928parallel
Strand 6
C
955 957parallel
Strand 7
C
982 984parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
812 814first strand
Strand 2
D
841 843parallel
Strand 3
D
869 871parallel
Strand 4
D
898 900parallel
Strand 5
D
926 928parallel
Strand 6
D
955 957parallel
Strand 7
D
982 984parallel
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