Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y41 entry

There are 2 chains in PDB entry 5Y41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 362PHE 598
B
 PRO 360PHE 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5Y41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
363 374Right-handed alpha
Helix 2
AA2
A
378 382Right-handed 310
Helix 3
AA3
A
399 423Right-handed alpha
Helix 4
AA4
A
431 455Right-handed alpha
Helix 5
AA5
A
456 459Right-handed 310
Helix 6
AA6
A
472 480Right-handed alpha
Helix 7
AA7
A
481 495Right-handed alpha
Helix 8
AA8
A
499 512Right-handed alpha
Helix 9
AA9
A
520 543Right-handed alpha
Helix 10
AB1
A
548 557Right-handed alpha
Helix 11
AB2
A
557 580Right-handed alpha
Helix 12
AB3
A
585 596Right-handed alpha
Helix 13
AB4
B
363 374Right-handed alpha
Helix 14
AB5
B
378 382Right-handed 310
Helix 15
AB6
B
400 423Right-handed alpha
Helix 16
AB7
B
426 430Right-handed 310
Helix 17
AB8
B
431 455Right-handed alpha
Helix 18
AB9
B
456 459Right-handed 310
Helix 19
AC1
B
472 480Right-handed alpha
Helix 20
AC2
B
481 495Right-handed alpha
Helix 21
AC3
B
499 512Right-handed alpha
Helix 22
AC4
B
520 543Right-handed alpha
Helix 23
AC5
B
548 580Right-handed alpha
Helix 24
AC6
B
585 596Right-handed alpha
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There are 2 sheets in PDB entry 5Y41. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 463first strand
Strand 2
A
469 471anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
461 463first strand
Strand 2
B
469 471anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il