Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y6E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y6E entry

There are 2 chains in PDB entry 5Y6E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 32ARG 262
B
 GLU 32ARG 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5Y6E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 39Right-handed 310
Helix 2
AA2
A
88 103Right-handed alpha
Helix 3
AA3
A
116 121Right-handed alpha
Helix 4
AA4
A
122 129Right-handed alpha
Helix 5
AA5
A
136 147Right-handed alpha
Helix 6
AA6
A
198 200Right-handed 310
Helix 7
AA7
A
218 230Right-handed alpha
Helix 8
AA8
A
246 261Right-handed alpha
Helix 9
AA9
B
35 39Right-handed 310
Helix 10
AB1
B
88 103Right-handed alpha
Helix 11
AB2
B
116 121Right-handed alpha
Helix 12
AB3
B
122 129Right-handed alpha
Helix 13
AB4
B
136 147Right-handed alpha
Helix 14
AB5
B
198 200Right-handed 310
Helix 15
AB6
B
218 230Right-handed alpha
Helix 16
AB7
B
246 261Right-handed alpha
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There are 4 sheets in PDB entry 5Y6E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
53 62anti-parallel
Strand 3
A
65 76anti-parallel
Strand 4
A
79 83anti-parallel
Strand 5
A
107 111parallel
Strand 6
A
132 135parallel
Strand 7
A
153 154parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
170 173anti-parallel
Strand 3
A
185 188anti-parallel
Strand 4
A
193 197anti-parallel
Strand 5
A
235 238parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 50first strand
Strand 2
B
53 62anti-parallel
Strand 3
B
65 76anti-parallel
Strand 4
B
79 83anti-parallel
Strand 5
B
107 111parallel
Strand 6
B
132 135parallel
Strand 7
B
153 154parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 167first strand
Strand 2
B
170 174anti-parallel
Strand 3
B
185 188anti-parallel
Strand 4
B
193 197anti-parallel
Strand 5
B
235 238parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il