Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y6L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y6L entry

There are 5 chains in PDB entry 5Y6L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 211
B
 SER 0ASN 172
C
 ALA 2THR 171
D
 LEU 106LEU 321
E
 PRO 336LYS 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5Y6L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 20Right-handed alpha
Helix 2
AA2
A
21 23Right-handed 310
Helix 3
AA3
A
61 73Right-handed alpha
Helix 4
AA4
A
78 91Right-handed alpha
Helix 5
AA5
A
91 105Right-handed alpha
Helix 6
AA6
A
110 115Right-handed alpha
Helix 7
AA7
A
117 132Right-handed alpha
Helix 8
AA8
A
142 157Right-handed alpha
Helix 9
AA9
A
158 162Right-handed 310
Helix 10
AB1
A
166 179Right-handed alpha
Helix 11
AB2
A
179 191Right-handed alpha
Helix 12
AB3
A
193 197Right-handed 310
Helix 13
AB4
A
198 204Right-handed alpha
Helix 14
AB5
B
2 14Right-handed alpha
Helix 15
AB6
B
43 55Right-handed alpha
Helix 16
AB7
B
57 62Right-handed 310
Helix 17
AB8
B
64 82Right-handed alpha
Helix 18
AB9
B
87 103Right-handed alpha
Helix 19
AC1
B
114 129Right-handed alpha
Helix 20
AC2
B
132 139Right-handed alpha
Helix 21
AC3
B
139 151Right-handed alpha
Helix 22
AC4
B
152 157Right-handed alpha
Helix 23
AC5
C
14 25Right-handed alpha
Helix 24
AC6
C
50 62Right-handed alpha
Helix 25
AC7
C
63 66Right-handed 310
Helix 26
AC8
C
71 87Right-handed alpha
Helix 27
AC9
C
94 107Right-handed alpha
Helix 28
AD1
C
118 130Right-handed alpha
Helix 29
AD2
C
131 139Right-handed alpha
Helix 30
AD3
C
144 156Right-handed alpha
Helix 31
AD4
C
157 167Right-handed alpha
Helix 32
AD5
D
106 110Right-handed 310
Helix 33
AD6
D
132 143Right-handed alpha
Helix 34
AD7
D
162 167Right-handed 310
Helix 35
AD8
D
209 220Right-handed alpha
Helix 36
AD9
D
226 243Right-handed alpha
Helix 37
AE1
D
248 266Right-handed alpha
Helix 38
AE2
D
275 288Right-handed alpha
Helix 39
AE3
D
296 309Right-handed alpha
Helix 40
AE4
D
309 321Right-handed alpha
Helix 41
AE5
E
347 358Right-handed alpha
Helix 42
AE6
E
369 385Right-handed alpha
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There are 5 sheets in PDB entry 5Y6L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
2 5parallel
Strand 3
A
50 52anti-parallel
Strand 4
A
58 59anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
32 34anti-parallel
Strand 3
B
40 42anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 35first strand
Strand 2
C
5 9parallel
Strand 3
C
39 43anti-parallel
Strand 4
C
46 48anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
207 208first strand
Strand 2
D
196 198anti-parallel
Strand 3
D
120 126anti-parallel
Strand 4
D
183 189parallel
Strand 5
D
148 155parallel
Strand 6
E
340 341anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
344 346first strand
Strand 2
E
389 391parallel
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