Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y7G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y7G entry

There are 3 chains in PDB entry 5Y7G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 15HIS 556
B
 PRO 17ASP 559
C
 GLU 18PRO 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 5Y7G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 37Right-handed alpha
Helix 2
AA2
A
38 41Right-handed 310
Helix 3
AA3
A
42 54Right-handed alpha
Helix 4
AA4
A
56 69Right-handed alpha
Helix 5
AA5
A
77 80Right-handed 310
Helix 6
AA6
A
86 91Right-handed alpha
Helix 7
AA7
A
91 97Right-handed alpha
Helix 8
AA8
A
107 115Right-handed alpha
Helix 9
AA9
A
116 124Right-handed alpha
Helix 10
AB1
A
134 143Right-handed alpha
Helix 11
AB2
A
153 155Right-handed 310
Helix 12
AB3
A
168 181Right-handed alpha
Helix 13
AB4
A
188 196Right-handed alpha
Helix 14
AB5
A
214 234Right-handed alpha
Helix 15
AB6
A
251 272Right-handed alpha
Helix 16
AB7
A
274 284Right-handed alpha
Helix 17
AB8
A
289 301Right-handed alpha
Helix 18
AB9
A
303 317Right-handed alpha
Helix 19
AC1
A
320 338Right-handed alpha
Helix 20
AC2
A
366 375Right-handed alpha
Helix 21
AC3
A
387 398Right-handed alpha
Helix 22
AC4
A
398 403Right-handed alpha
Helix 23
AC5
A
425 430Right-handed alpha
Helix 24
AC6
A
430 440Right-handed alpha
Helix 25
AC7
A
445 458Right-handed alpha
Helix 26
AC8
A
471 482Right-handed alpha
Helix 27
AC9
A
483 497Right-handed alpha
Helix 28
AD1
A
497 502Right-handed alpha
Helix 29
AD2
A
531 544Right-handed alpha
Helix 30
AD3
B
20 37Right-handed alpha
Helix 31
AD4
B
38 41Right-handed 310
Helix 32
AD5
B
42 54Right-handed alpha
Helix 33
AD6
B
56 69Right-handed alpha
Helix 34
AD7
B
77 80Right-handed 310
Helix 35
AD8
B
86 91Right-handed alpha
Helix 36
AD9
B
91 97Right-handed alpha
Helix 37
AE1
B
107 115Right-handed alpha
Helix 38
AE2
B
116 124Right-handed alpha
Helix 39
AE3
B
134 143Right-handed alpha
Helix 40
AE4
B
152 156Right-handed alpha
Helix 41
AE5
B
168 181Right-handed alpha
Helix 42
AE6
B
187 196Right-handed alpha
Helix 43
AE7
B
214 233Right-handed alpha
Helix 44
AE8
B
236 244Right-handed alpha
Helix 45
AE9
B
251 273Right-handed alpha
Helix 46
AF1
B
274 284Right-handed alpha
Helix 47
AF2
B
289 301Right-handed alpha
Helix 48
AF3
B
303 317Right-handed alpha
Helix 49
AF4
B
320 339Right-handed alpha
Helix 50
AF5
B
366 376Right-handed alpha
Helix 51
AF6
B
387 398Right-handed alpha
Helix 52
AF7
B
398 403Right-handed alpha
Helix 53
AF8
B
425 430Right-handed alpha
Helix 54
AF9
B
430 440Right-handed alpha
Helix 55
AG1
B
445 458Right-handed alpha
Helix 56
AG2
B
471 482Right-handed alpha
Helix 57
AG3
B
483 497Right-handed alpha
Helix 58
AG4
B
497 502Right-handed alpha
Helix 59
AG5
B
513 516Right-handed 310
Helix 60
AG6
B
531 544Right-handed alpha
Helix 61
AG7
C
20 36Right-handed alpha
Helix 62
AG8
C
37 41Right-handed 310
Helix 63
AG9
C
42 54Right-handed alpha
Helix 64
AH1
C
56 69Right-handed alpha
Helix 65
AH2
C
86 91Right-handed alpha
Helix 66
AH3
C
91 97Right-handed alpha
Helix 67
AH4
C
107 115Right-handed alpha
Helix 68
AH5
C
116 124Right-handed alpha
Helix 69
AH6
C
134 143Right-handed alpha
Helix 70
AH7
C
152 156Right-handed alpha
Helix 71
AH8
C
168 181Right-handed alpha
Helix 72
AH9
C
187 195Right-handed alpha
Helix 73
AI1
C
214 232Right-handed alpha
Helix 74
AI2
C
251 272Right-handed alpha
Helix 75
AI3
C
274 284Right-handed alpha
Helix 76
AI4
C
289 301Right-handed alpha
Helix 77
AI5
C
303 317Right-handed alpha
Helix 78
AI6
C
320 338Right-handed alpha
Helix 79
AI7
C
366 375Right-handed alpha
Helix 80
AI8
C
387 398Right-handed alpha
Helix 81
AI9
C
398 403Right-handed alpha
Helix 82
AJ1
C
425 439Right-handed alpha
Helix 83
AJ2
C
440 442Right-handed 310
Helix 84
AJ3
C
444 458Right-handed alpha
Helix 85
AJ4
C
471 482Right-handed alpha
Helix 86
AJ5
C
483 497Right-handed alpha
Helix 87
AJ6
C
497 502Right-handed alpha
Helix 88
AJ7
C
531 544Right-handed alpha
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There are 9 sheets in PDB entry 5Y7G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
163 166anti-parallel
Strand 3
A
100 102anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
150 151anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 358first strand
Strand 2
A
548 555parallel
Strand 3
A
517 524parallel
Strand 4
A
508 512anti-parallel
Strand 5
A
381 384anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
163 166anti-parallel
Strand 3
B
100 101anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
150 151anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 359first strand
Strand 2
B
548 556parallel
Strand 3
B
517 524parallel
Strand 4
B
508 512anti-parallel
Strand 5
B
381 384anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 75first strand
Strand 2
C
163 166anti-parallel
Strand 3
C
100 102anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 106first strand
Strand 2
C
150 151anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
353 358first strand
Strand 2
C
548 555parallel
Strand 3
C
518 524parallel
Strand 4
C
508 511anti-parallel
Strand 5
C
381 384anti-parallel
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