Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y7Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y7Y entry

There are 2 chains in PDB entry 5Y7Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 38LEU 278
B
 SER 95VAL 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5Y7Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 54Right-handed alpha
Helix 2
AA2
A
58 63Right-handed alpha
Helix 3
AA3
A
66 90Right-handed alpha
Helix 4
AA4
A
116 123Right-handed alpha
Helix 5
AA5
A
142 148Right-handed alpha
Helix 6
AA6
A
150 155Right-handed alpha
Helix 7
AA7
A
158 163Right-handed 310
Helix 8
AA8
A
164 166Right-handed 310
Helix 9
AA9
A
167 176Right-handed alpha
Helix 10
AB1
A
197 207Right-handed alpha
Helix 11
AB2
A
217 220Right-handed 310
Helix 12
AB3
B
98 116Right-handed alpha
Helix 13
AB4
B
116 121Right-handed alpha
Helix 14
AB5
B
127 144Right-handed alpha
Helix 15
AB6
B
160 172Right-handed alpha
Helix 16
AB7
B
192 197Right-handed alpha
Helix 17
AB8
B
209 213Right-handed 310
Helix 18
AB9
B
219 225Right-handed alpha
Helix 19
AC1
B
379 385Right-handed alpha
Helix 20
AC2
B
387 392Right-handed alpha
Helix 21
AC3
B
395 400Right-handed 310
Helix 22
AC4
B
401 403Right-handed 310
Helix 23
AC5
B
404 419Right-handed alpha
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There are 3 sheets in PDB entry 5Y7Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 139first strand
Strand 2
A
126 130anti-parallel
Strand 3
A
268 276anti-parallel
Strand 4
A
239 250anti-parallel
Strand 5
A
222 230anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
174 179anti-parallel
Strand 3
B
337 342anti-parallel
Strand 4
B
306 311anti-parallel
Strand 5
B
263 265anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 376first strand
Strand 2
B
362 367anti-parallel
Strand 3
B
455 463anti-parallel
Strand 4
B
436 447anti-parallel
Strand 5
B
423 430anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il