Analysis of interatomic Contacts of Structural Units in PDB entry:
5Y9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Y9F entry

There are 3 chains in PDB entry 5Y9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 20LEU 473
B
LYS 20LEU 473
C
LYS 20GLN 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are160 helices in PDB entry 5Y9F. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
23 27Right-handed 310
Helix 2
AA2
A
209 214Right-handed alpha
Helix 3
AA3
A
233 239Right-handed alpha
Helix 4
AA4
A
272 276Right-handed 310
Helix 5
AA5
A
303 305Right-handed 310
Helix 6
AA6
A
357 359Right-handed 310
Helix 7
AA7
A
389 396Right-handed alpha
Helix 8
AA8
A
396 403Right-handed alpha
Helix 9
AA9
A
459 462Right-handed 310
Helix 10
AB1
A
463 471Right-handed alpha
Helix 11
AB2
B
23 27Right-handed 310
Helix 12
AB3
B
209 214Right-handed alpha
Helix 13
AB4
B
233 239Right-handed alpha
Helix 14
AB5
B
272 276Right-handed 310
Helix 15
AB6
B
303 305Right-handed 310
Helix 16
AB7
B
357 359Right-handed 310
Helix 17
AB8
B
389 396Right-handed alpha
Helix 18
AB9
B
396 403Right-handed alpha
Helix 19
AC1
B
459 462Right-handed 310
Helix 20
AC2
B
463 471Right-handed alpha
Helix 21
AC3
C
23 27Right-handed 310
Helix 22
AC4
C
209 214Right-handed alpha
Helix 23
AC5
C
233 239Right-handed alpha
Helix 24
AC6
C
272 276Right-handed 310
Helix 25
AC7
C
303 305Right-handed 310
Helix 26
AC8
C
324 326Right-handed 310
Helix 27
AC9
C
357 359Right-handed 310
Helix 28
AD1
C
389 396Right-handed alpha
Helix 29
AD2
C
396 403Right-handed alpha
Helix 30
AD3
C
459 462Right-handed 310
Helix 31
AD4
C
463 471Right-handed alpha
Helix 32
AD5
D
23 27Right-handed 310
Helix 33
AD6
D
209 214Right-handed alpha
Helix 34
AD7
D
233 239Right-handed alpha
Helix 35
AD8
D
272 276Right-handed 310
Helix 36
AD9
D
303 305Right-handed 310
Helix 37
AE1
D
357 359Right-handed 310
Helix 38
AE2
D
389 396Right-handed alpha
Helix 39
AE3
D
396 403Right-handed alpha
Helix 40
AE4
D
459 462Right-handed 310
Helix 41
AE5
D
463 471Right-handed alpha
Helix 42
AE6
E
23 27Right-handed 310
Helix 43
AE7
E
209 214Right-handed alpha
Helix 44
AE8
E
233 239Right-handed alpha
Helix 45
AE9
E
272 276Right-handed 310
Helix 46
AF1
E
303 305Right-handed 310
Helix 47
AF2
E
357 359Right-handed 310
Helix 48
AF3
E
389 396Right-handed alpha
Helix 49
AF4
E
396 403Right-handed alpha
Helix 50
AF5
E
459 462Right-handed 310
Helix 51
AF6
E
463 471Right-handed alpha
Helix 52
AF7
F
23 27Right-handed 310
Helix 53
AF8
F
209 214Right-handed alpha
Helix 54
AF9
F
233 239Right-handed alpha
Helix 55
AG1
F
272 276Right-handed 310
Helix 56
AG2
F
303 305Right-handed 310
Helix 57
AG3
F
357 359Right-handed 310
Helix 58
AG4
F
389 396Right-handed alpha
Helix 59
AG5
F
396 403Right-handed alpha
Helix 60
AG6
F
459 462Right-handed 310
Helix 61
AG7
F
463 471Right-handed alpha
Helix 62
AG8
G
23 27Right-handed 310
Helix 63
AG9
G
209 214Right-handed alpha
Helix 64
AH1
G
233 239Right-handed alpha
Helix 65
AH2
G
272 276Right-handed 310
Helix 66
AH3
G
303 305Right-handed 310
Helix 67
AH4
G
357 359Right-handed 310
Helix 68
AH5
G
389 396Right-handed alpha
Helix 69
AH6
G
396 403Right-handed alpha
Helix 70
AH7
G
459 462Right-handed 310
Helix 71
AH8
G
463 471Right-handed alpha
Helix 72
AH9
H
23 27Right-handed 310
Helix 73
AI1
H
209 214Right-handed alpha
Helix 74
AI2
H
233 239Right-handed alpha
Helix 75
AI3
H
272 276Right-handed 310
Helix 76
AI4
H
303 305Right-handed 310
Helix 77
AI5
H
357 359Right-handed 310
Helix 78
AI6
H
389 396Right-handed alpha
Helix 79
AI7
H
396 403Right-handed alpha
Helix 80
AI8
H
459 462Right-handed 310
Helix 81
AI9
H
463 471Right-handed alpha
Helix 82
AJ1
I
23 27Right-handed 310
Helix 83
AJ2
I
209 214Right-handed alpha
Helix 84
AJ3
I
233 239Right-handed alpha
Helix 85
AJ4
I
272 276Right-handed 310
Helix 86
AJ5
I
303 305Right-handed 310
Helix 87
AJ6
I
357 359Right-handed 310
Helix 88
AJ7
I
389 396Right-handed alpha
Helix 89
AJ8
I
396 403Right-handed alpha
Helix 90
AJ9
I
459 462Right-handed 310
Helix 91
AK1
I
463 471Right-handed alpha
Helix 92
AK2
J
23 27Right-handed 310
Helix 93
AK3
J
209 214Right-handed alpha
Helix 94
AK4
J
233 239Right-handed alpha
Helix 95
AK5
J
272 276Right-handed 310
Helix 96
AK6
J
303 305Right-handed 310
Helix 97
AK7
J
357 359Right-handed 310
Helix 98
AK8
J
389 396Right-handed alpha
Helix 99
AK9
J
396 403Right-handed alpha
Helix 100
AL1
J
459 462Right-handed 310
Helix 101
AL2
J
463 471Right-handed alpha
Helix 102
AL3
K
84 88Right-handed 310
Helix 103
AL4
K
126 131Right-handed alpha
Helix 104
AL5
K
188 193Right-handed alpha
Helix 105
AL6
L
28 30Right-handed 310
Helix 106
AL7
L
61 65Right-handed 310
Helix 107
AL8
L
87 91Right-handed 310
Helix 108
AL9
O
84 88Right-handed 310
Helix 109
AM1
O
126 132Right-handed alpha
Helix 110
AM2
O
188 193Right-handed alpha
Helix 111
AM3
P
28 30Right-handed 310
Helix 112
AM4
P
87 91Right-handed 310
Helix 113
AM5
Q
84 88Right-handed 310
Helix 114
AM6
Q
126 133Right-handed alpha
Helix 115
AM7
Q
188 193Right-handed alpha
Helix 116
AM8
R
28 30Right-handed 310
Helix 117
AM9
R
61 65Right-handed 310
Helix 118
AN1
R
87 91Right-handed 310
Helix 119
AN2
S
84 88Right-handed 310
Helix 120
AN3
S
128 132Right-handed 310
Helix 121
AN4
S
188 193Right-handed alpha
Helix 122
AN5
T
28 30Right-handed 310
Helix 123
AN6
T
61 65Right-handed 310
Helix 124
AN7
T
87 91Right-handed 310
Helix 125
AN8
M
84 88Right-handed 310
Helix 126
AN9
M
126 132Right-handed alpha
Helix 127
AO1
M
188 193Right-handed alpha
Helix 128
AO2
N
28 30Right-handed 310
Helix 129
AO3
N
87 91Right-handed 310
Helix 130
AO4
c
84 88Right-handed 310
Helix 131
AO5
c
126 131Right-handed alpha
Helix 132
AO6
c
188 193Right-handed alpha
Helix 133
AO7
d
28 30Right-handed 310
Helix 134
AO8
d
61 65Right-handed 310
Helix 135
AO9
d
87 91Right-handed 310
Helix 136
AP1
V
28 30Right-handed 310
Helix 137
AP2
V
61 65Right-handed 310
Helix 138
AP3
V
87 91Right-handed 310
Helix 139
AP4
V
210 213Right-handed 310
Helix 140
AP5
W
84 88Right-handed 310
Helix 141