Analysis of interatomic Contacts of Structural Units in PDB entry:
5YBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YBU entry

There are 2 chains in PDB entry 5YBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1079PHE 1326
B
 LYS 1152ALA 1166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5YBU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1086 1100Right-handed alpha
Helix 2
AA2
A
1102 1107Right-handed alpha
Helix 3
AA3
A
1108 1127Right-handed alpha
Helix 4
AA4
A
1132 1147Right-handed alpha
Helix 5
AA5
A
1147 1156Right-handed alpha
Helix 6
AA6
A
1164 1172Right-handed alpha
Helix 7
AA7
A
1174 1184Right-handed alpha
Helix 8
AA8
A
1198 1206Right-handed alpha
Helix 9
AA9
A
1210 1224Right-handed alpha
Helix 10
AB1
A
1236 1244Right-handed alpha
Helix 11
AB2
A
1246 1256Right-handed alpha
Helix 12
AB3
A
1269 1278Right-handed alpha
Helix 13
AB4
A
1279 1288Right-handed alpha
Helix 14
AB5
A
1303 1311Right-handed alpha
Helix 15
AB6
A
1313 1325Right-handed alpha
Helix 16
AB7
B
1152 1156Right-handed 310
Helix 17
AB8
B
1159 1165Right-handed alpha
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There are no sheets in PDB entry 5YBU
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il