Analysis of interatomic Contacts of Structural Units in PDB entry:
5YJE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5YJE entry

There are 3 chains in PDB entry 5YJE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 682	LYS 1017
B	SER 675	ASP 1016
C	LYS 682	LEU 1011

There are 26 helices in PDB entry 5YJE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	813	818	Right-handed alpha
Helix 2	AA2	A	861	863	Right-handed 310
Helix 3	AA3	A	884	891	Right-handed alpha
Helix 4	AA4	A	907	929	Right-handed alpha
Helix 5	AA5	A	931	950	Right-handed alpha
Helix 6	AA6	A	951	964	Right-handed alpha
Helix 7	AA7	A	983	996	Right-handed alpha
Helix 8	AA8	A	997	999	Right-handed 310
Helix 9	AA9	A	1000	1016	Right-handed alpha
Helix 10	AB1	B	813	818	Right-handed alpha
Helix 11	AB2	B	864	868	Right-handed 310
Helix 12	AB3	B	884	890	Right-handed alpha
Helix 13	AB4	B	907	929	Right-handed alpha
Helix 14	AB5	B	931	950	Right-handed alpha
Helix 15	AB6	B	951	963	Right-handed alpha
Helix 16	AB7	B	983	996	Right-handed alpha
Helix 17	AB8	B	1000	1013	Right-handed alpha
Helix 18	AB9	B	1014	1016	Right-handed 310
Helix 19	AC1	C	813	817	Right-handed alpha
Helix 20	AC2	C	885	891	Right-handed alpha
Helix 21	AC3	C	907	929	Right-handed alpha
Helix 22	AC4	C	931	950	Right-handed alpha
Helix 23	AC5	C	951	964	Right-handed alpha
Helix 24	AC6	C	983	996	Right-handed alpha
Helix 25	AC7	C	997	999	Right-handed 310
Helix 26	AC8	C	1000	1007	Right-handed alpha

There are 12 sheets in PDB entry 5YJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	691	695	first strand
Strand 2	A	702	713	anti-parallel
Strand 3	A	716	725	anti-parallel
Strand 4	A	728	734	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	738	743	first strand
Strand 2	A	747	752	anti-parallel
Strand 3	A	756	761	anti-parallel
Strand 4	A	766	772	anti-parallel
Strand 5	B	853	859	anti-parallel
Strand 6	B	843	848	anti-parallel
Strand 7	B	835	838	anti-parallel
Strand 8	B	826	829	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	777	783	first strand
Strand 2	A	786	791	anti-parallel
Strand 3	A	795	800	anti-parallel
Strand 4	A	805	812	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	829	first strand
Strand 2	A	835	839	anti-parallel
Strand 3	A	843	848	anti-parallel
Strand 4	A	853	859	anti-parallel
Strand 5	C	766	772	anti-parallel
Strand 6	C	756	761	anti-parallel
Strand 7	C	747	752	anti-parallel
Strand 8	C	738	743	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	977	978	first strand
Strand 2	A	981	982	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	691	695	first strand
Strand 2	B	702	713	anti-parallel
Strand 3	B	716	725	anti-parallel
Strand 4	B	728	734	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	738	743	first strand
Strand 2	B	747	752	anti-parallel
Strand 3	B	756	761	anti-parallel
Strand 4	B	771	772	anti-parallel
Strand 5	C	853	859	anti-parallel
Strand 6	C	843	848	anti-parallel
Strand 7	C	835	839	anti-parallel
Strand 8	C	824	829	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	777	783	first strand
Strand 2	B	786	791	anti-parallel
Strand 3	B	795	800	anti-parallel
Strand 4	B	805	812	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	977	978	first strand
Strand 2	B	981	982	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	691	695	first strand
Strand 2	C	702	713	anti-parallel
Strand 3	C	716	725	anti-parallel
Strand 4	C	728	734	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	777	783	first strand
Strand 2	C	786	791	anti-parallel
Strand 3	C	795	800	anti-parallel
Strand 4	C	805	812	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	977	978	first strand
Strand 2	C	981	982	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5YJE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5YJE