Analysis of interatomic Contacts of Structural Units in PDB entry:
5YL4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YL4 entry

There are 6 chains in PDB entry 5YL4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1VAL 437
B
MET 1ALA 428
C
MET 1VAL 440
D
MET 1ASP 431
E
MET 6GLU 141
F
MET 1HIS 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 93 helices in PDB entry 5YL4. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
10 28Right-handed alpha
Helix 2
AA2
A
48 51Right-handed 310
Helix 3
AA3
A
72 81Right-handed alpha
Helix 4
AA4
A
88 90Right-handed 310
Helix 5
AA5
A
102 108Right-handed alpha
Helix 6
AA6
A
108 113Right-handed alpha
Helix 7
AA7
A
114 127Right-handed alpha
Helix 8
AA8
A
143 161Right-handed alpha
Helix 9
AA9
A
182 195Right-handed alpha
Helix 10
AB1
A
196 198Right-handed 310
Helix 11
AB2
A
206 218Right-handed alpha
Helix 12
AB3
A
223 244Right-handed alpha
Helix 13
AB4
A
251 260Right-handed alpha
Helix 14
AB5
A
287 294Right-handed alpha
Helix 15
AB6
A
295 301Right-handed 310
Helix 16
AB7
A
324 339Right-handed alpha
Helix 17
AB8
A
384 401Right-handed alpha
Helix 18
AB9
A
404 410Right-handed alpha
Helix 19
AC1
A
415 437Right-handed alpha
Helix 20
AC2
B
10 28Right-handed alpha
Helix 21
AC3
B
40 44Right-handed 310
Helix 22
AC4
B
46 49Right-handed 310
Helix 23
AC5
B
69 79Right-handed alpha
Helix 24
AC6
B
81 85Right-handed 310
Helix 25
AC7
B
86 88Right-handed 310
Helix 26
AC8
B
100 107Right-handed alpha
Helix 27
AC9
B
107 126Right-handed alpha
Helix 28
AD1
B
142 159Right-handed alpha
Helix 29
AD2
B
180 196Right-handed alpha
Helix 30
AD3
B
204 213Right-handed alpha
Helix 31
AD4
B
221 242Right-handed alpha
Helix 32
AD5
B
249 258Right-handed alpha
Helix 33
AD6
B
285 294Right-handed alpha
Helix 34
AD7
B
295 299Right-handed 310
Helix 35
AD8
B
304 308Right-handed 310
Helix 36
AD9
B
322 337Right-handed alpha
Helix 37
AE1
B
338 341Right-handed 310
Helix 38
AE2
B
374 390Right-handed alpha
Helix 39
AE3
B
395 400Right-handed alpha
Helix 40
AE4
B
404 428Right-handed alpha
Helix 41
AE5
C
10 29Right-handed alpha
Helix 42
AE6
C
47 51Right-handed 310
Helix 43
AE7
C
72 80Right-handed alpha
Helix 44
AE8
C
88 90Right-handed 310
Helix 45
AE9
C
102 108Right-handed alpha
Helix 46
AF1
C
110 113Right-handed 310
Helix 47
AF2
C
114 127Right-handed alpha
Helix 48
AF3
C
143 162Right-handed alpha
Helix 49
AF4
C
182 195Right-handed alpha
Helix 50
AF5
C
196 198Right-handed 310
Helix 51
AF6
C
206 218Right-handed alpha
Helix 52
AF7
C
223 244Right-handed alpha
Helix 53
AF8
C
251 260Right-handed alpha
Helix 54
AF9
C
277 282Right-handed alpha
Helix 55
AG1
C
287 295Right-handed alpha
Helix 56
AG2
C
296 301Right-handed 310
Helix 57
AG3
C
306 310Right-handed 310
Helix 58
AG4
C
324 339Right-handed alpha
Helix 59
AG5
C
384 400Right-handed alpha
Helix 60
AG6
C
404 410Right-handed alpha
Helix 61
AG7
C
414 437Right-handed alpha
Helix 62
AG8
D
10 28Right-handed alpha
Helix 63
AG9
D
41 46Right-handed alpha
Helix 64
AH1
D
47 49Right-handed 310
Helix 65
AH2
D
71 79Right-handed alpha
Helix 66
AH3
D
86 88Right-handed 310
Helix 67
AH4
D
100 106Right-handed alpha
Helix 68
AH5
D
107 126Right-handed alpha
Helix 69
AH6
D
142 159Right-handed alpha
Helix 70
AH7
D
180 196Right-handed alpha
Helix 71
AH8
D
204 214Right-handed alpha
Helix 72
AH9
D
221 236Right-handed alpha
Helix 73
AI1
D
237 242Right-handed alpha
Helix 74
AI2
D
249 258Right-handed alpha
Helix 75
AI3
D
285 294Right-handed alpha
Helix 76
AI4
D
295 299Right-handed 310
Helix 77
AI5
D
304 308Right-handed 310
Helix 78
AI6
D
322 337Right-handed alpha
Helix 79
AI7
D
338 341Right-handed 310
Helix 80
AI8
D
374 390Right-handed alpha
Helix 81
AI9
D
395 400Right-handed alpha
Helix 82
AJ1
D
404 428Right-handed alpha
Helix 83
AJ2
E
46 139Right-handed alpha
Helix 84
AJ3
F
11 23Right-handed alpha
Helix 85
AJ4
F
48 52Right-handed 310
Helix 86
AJ5
F
68 73Right-handed alpha
Helix 87
AJ6
F
73 84Right-handed alpha
Helix 88
AJ7
F
235 240Right-handed alpha
Helix 89
AJ8
F
242 247Right-handed alpha
Helix 90
AJ9
F
264 276Right-handed alpha
Helix 91
AK1
F
278 283Right-handed alpha
Helix 92
AK2
F
283 303Right-handed alpha
Helix 93
AK3
F
342 354Right-handed alpha
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There are 14 sheets in PDB entry 5YL4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
349 356parallel
Strand 5
E
17 25anti-parallel
Strand 6
E
7 13anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
90 92first strand
Strand 2
B
63 67parallel
Strand 3
B
3 9parallel
Strand 4
B
130 138parallel
Strand 5
B
163 170parallel
Strand 6
B
198 203parallel
Strand 7
B
265 271parallel
Strand 8
B
363 371anti-parallel
Strand 9
B
310 319anti-parallel
Strand 10
B
349 354parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
51 54first strand
Strand 2
B
58 61anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
92 94first strand
Strand 2
C
65 69parallel
Strand 3
C
4 9parallel
Strand 4
C
134 140parallel
Strand 5
C
165 172parallel
Strand 6
C
200 205parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
53 55first strand
Strand 2
C
61 63anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
269 273first strand
Strand 2
C
373 381anti-parallel
Strand 3
C
312 321anti-parallel
Strand 4
C
352 356parallel
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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
90 92first strand
Strand 2
D
63 67parallel
Strand 3
D
3 9parallel
Strand 4
D
130 138parallel
Strand 5
D
163 170parallel
Strand 6
D
198 203parallel
Strand 7
D
265 271parallel
Strand 8
D
364 371anti-parallel
Strand 9
D
310 318anti-parallel
Strand 10
D
349 354parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
51 54first strand
Strand 2
D
58 61anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
27 29first strand
Strand 2
F
2 6parallel
Strand 3
F
39 41parallel
Strand 4
F
61 62parallel
Strand 5
F
310 311parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
97 99first strand
Strand 2
F
181 184anti-parallel
Strand 3
F
147 150anti-parallel
Strand 4
F
161 163anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
261 263first strand
Strand 2
F
220 223anti-parallel
Strand 3
F
199 207anti-parallel
Strand 4
F
313 321anti-parallel
Strand 5
F
327 333anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
261 263first strand
Strand 2
F
220 223anti-parallel
Strand 3
F
199 207anti-parallel
Strand 4
F
213 216anti-parallel
Strand 5
F
375 377anti-parallel
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