Analysis of interatomic Contacts of Structural Units in PDB entry:
5YVT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5YVT entry

There are 2 chains in PDB entry 5YVT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4ASP 337
B
 ARG 15ILE 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5YVT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 30Right-handed alpha
Helix 2
AA2
A
54 65Right-handed alpha
Helix 3
AA3
A
82 92Right-handed alpha
Helix 4
AA4
A
146 163Right-handed alpha
Helix 5
AA5
A
177 195Right-handed alpha
Helix 6
AA6
A
205 213Right-handed alpha
Helix 7
AA7
A
215 219Right-handed 310
Helix 8
AA8
A
230 240Right-handed alpha
Helix 9
AA9
A
277 292Right-handed alpha
Helix 10
AB1
A
293 311Right-handed alpha
Helix 11
AB2
A
315 319Right-handed 310
Helix 12
AB3
A
323 336Right-handed alpha
Helix 13
AB4
B
26 41Right-handed alpha
Helix 14
AB5
B
58 72Right-handed alpha
Helix 15
AB6
B
91 100Right-handed alpha
Helix 16
AB7
B
155 172Right-handed alpha
Helix 17
AB8
B
188 202Right-handed alpha
Helix 18
AB9
B
214 222Right-handed alpha
Helix 19
AC1
B
224 228Right-handed 310
Helix 20
AC2
B
236 238Right-handed 310
Helix 21
AC3
B
239 249Right-handed alpha
Helix 22
AC4
B
275 279Right-handed 310
Helix 23
AC5
B
286 300Right-handed alpha
Helix 24
AC6
B
302 318Right-handed alpha
Helix 25
AC7
B
319 323Right-handed 310
Helix 26
AC8
B
324 328Right-handed 310
Helix 27
AC9
B
332 346Right-handed alpha
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There are 4 sheets in PDB entry 5YVT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
5 10parallel
Strand 3
A
66 69parallel
Strand 4
A
257 261parallel
Strand 5
A
247 251anti-parallel
Strand 6
A
95 101anti-parallel
Strand 7
A
114 120anti-parallel
Strand 8
A
221 224parallel
Strand 9
A
167 172parallel
Strand 10
A
199 204parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
51 52anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 134first strand
Strand 2
A
137 145anti-parallel
Strand 3
B
146 154anti-parallel
Strand 4
B
133 143anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 49first strand
Strand 2
B
16 21parallel
Strand 3
B
73 76parallel
Strand 4
B
265 269parallel
Strand 5
B
256 260anti-parallel
Strand 6
B
104 110anti-parallel
Strand 7
B
123 129anti-parallel
Strand 8
B
230 233parallel
Strand 9
B
176 181parallel
Strand 10
B
208 213parallel
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