Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z62

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5Z62 entry

There are 14 chains in PDB entry 5Z62 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 513
B	MET 1	LEU 227
C	THR 2	SER 261
D	SER 26	LYS 169
E	SER 42	VAL 150
F	ALA 32	HIS 129
G	SER 34	ASP 108
H	MET 5	ILE 86
I	PRO 3	LYS 75
J	LYS 25	LYS 80
K	THR 30	ARG 78
L	SER 17	THR 63
M	ILE 26	PRO 68
N	ARG 3	PHE 81

There are 73 helices in PDB entry 5Z62. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed alpha
Helix 2	AA2	A	11	42	Right-handed alpha
Helix 3	AA3	A	50	68	Right-handed alpha
Helix 4	AA4	A	69	87	Right-handed alpha
Helix 5	AA5	A	94	103	Right-handed alpha
Helix 6	AA6	A	104	118	Right-handed alpha
Helix 7	AA7	A	141	171	Right-handed alpha
Helix 8	AA8	A	177	181	Right-handed 310
Helix 9	AA9	A	182	215	Right-handed alpha
Helix 10	AB1	A	228	246	Right-handed alpha
Helix 11	AB2	A	247	263	Right-handed alpha
Helix 12	AB3	A	269	284	Right-handed alpha
Helix 13	AB4	A	298	310	Right-handed alpha
Helix 14	AB5	A	312	327	Right-handed alpha
Helix 15	AB6	A	335	359	Right-handed alpha
Helix 16	AB7	A	360	365	Right-handed alpha
Helix 17	AB8	A	370	382	Right-handed alpha
Helix 18	AB9	A	384	402	Right-handed alpha
Helix 19	AC1	A	406	426	Right-handed alpha
Helix 20	AC2	A	426	434	Right-handed alpha
Helix 21	AC3	A	444	446	Right-handed 310
Helix 22	AC4	A	447	478	Right-handed alpha
Helix 23	AC5	A	491	495	Right-handed 310
Helix 24	AC6	B	14	46	Right-handed alpha
Helix 25	AC7	B	58	65	Right-handed alpha
Helix 26	AC8	B	67	87	Right-handed alpha
Helix 27	AC9	B	215	220	Right-handed alpha
Helix 28	AD1	C	15	38	Right-handed alpha
Helix 29	AD2	C	40	67	Right-handed alpha
Helix 30	AD3	C	72	92	Right-handed alpha
Helix 31	AD4	C	94	103	Right-handed alpha
Helix 32	AD5	C	128	153	Right-handed alpha
Helix 33	AD6	C	156	184	Right-handed alpha
Helix 34	AD7	C	192	224	Right-handed alpha
Helix 35	AD8	C	232	257	Right-handed alpha
Helix 36	AD9	D	56	67	Right-handed alpha
Helix 37	AE1	D	68	73	Right-handed 310
Helix 38	AE2	D	74	86	Right-handed alpha
Helix 39	AE3	D	89	94	Right-handed alpha
Helix 40	AE4	D	99	125	Right-handed alpha
Helix 41	AE5	D	130	133	Right-handed 310
Helix 42	AE6	D	134	148	Right-handed alpha
Helix 43	AE7	D	156	158	Right-handed 310
Helix 44	AE8	E	48	60	Right-handed alpha
Helix 45	AE9	E	66	78	Right-handed alpha
Helix 46	AF1	E	85	99	Right-handed alpha
Helix 47	AF2	E	102	117	Right-handed alpha
Helix 48	AF3	E	121	129	Right-handed alpha
Helix 49	AF4	E	130	138	Right-handed alpha
Helix 50	AF5	E	141	146	Right-handed alpha
Helix 51	AF6	F	39	43	Right-handed 310
Helix 52	AF7	F	46	58	Right-handed alpha
Helix 53	AF8	G	35	45	Right-handed alpha
Helix 54	AF9	G	45	54	Right-handed alpha
Helix 55	AG1	H	6	11	Right-handed alpha
Helix 56	AG2	H	26	46	Right-handed alpha
Helix 57	AG3	H	54	56	Right-handed 310
Helix 58	AG4	H	57	65	Right-handed alpha
Helix 59	AG5	H	66	79	Right-handed alpha
Helix 60	AG6	I	13	41	Right-handed alpha
Helix 61	AG7	I	42	54	Right-handed alpha
Helix 62	AG8	I	57	69	Right-handed alpha
Helix 63	AG9	J	28	36	Right-handed alpha
Helix 64	AH1	J	42	47	Right-handed alpha
Helix 65	AH2	J	49	77	Right-handed alpha
Helix 66	AH3	K	32	60	Right-handed alpha
Helix 67	AH4	L	33	61	Right-handed alpha
Helix 68	AH5	M	36	61	Right-handed alpha
Helix 69	AH6	M	61	67	Right-handed alpha
Helix 70	AH7	N	4	12	Right-handed alpha
Helix 71	AH8	N	13	16	Right-handed 310
Helix 72	AH9	N	17	39	Right-handed alpha
Helix 73	AI1	N	43	47	Right-handed 310

There are 6 sheets in PDB entry 5Z62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	105	110	anti-parallel
Strand 3	B	95	102	anti-parallel
Strand 4	B	150	154	parallel
Strand 5	B	180	184	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	208	213	parallel
Strand 3	B	190	195	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	165	first strand
Strand 2	B	170	174	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	161	first strand
Strand 2	D	166	167	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	82	first strand
Strand 2	F	117	124	parallel
Strand 3	F	111	113	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	91	first strand
Strand 2	F	101	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5Z62

Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z62