Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z7R entry

There are 3 chains in PDB entry 5Z7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 254
B
 MET 1LYS 254
C
 MET 1LYS 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5Z7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 25Right-handed 310
Helix 2
AA2
A
29 46Right-handed alpha
Helix 3
AA3
A
67 72Right-handed alpha
Helix 4
AA4
A
75 96Right-handed alpha
Helix 5
AA5
A
110 118Right-handed alpha
Helix 6
AA6
A
133 138Right-handed 310
Helix 7
AA7
A
144 154Right-handed alpha
Helix 8
AA8
A
154 165Right-handed alpha
Helix 9
AA9
A
170 176Right-handed alpha
Helix 10
AB1
A
184 186Right-handed 310
Helix 11
AB2
A
187 202Right-handed alpha
Helix 12
AB3
A
203 218Right-handed alpha
Helix 13
AB4
A
221 237Right-handed alpha
Helix 14
AB5
A
239 254Right-handed alpha
Helix 15
AB6
B
29 45Right-handed alpha
Helix 16
AB7
B
67 72Right-handed alpha
Helix 17
AB8
B
75 96Right-handed alpha
Helix 18
AB9
B
110 117Right-handed alpha
Helix 19
AC1
B
132 138Right-handed 310
Helix 20
AC2
B
144 165Right-handed alpha
Helix 21
AC3
B
170 176Right-handed alpha
Helix 22
AC4
B
184 186Right-handed 310
Helix 23
AC5
B
187 201Right-handed alpha
Helix 24
AC6
B
203 218Right-handed alpha
Helix 25
AC7
B
221 237Right-handed alpha
Helix 26
AC8
B
239 251Right-handed alpha
Helix 27
AC9
C
29 46Right-handed alpha
Helix 28
AD1
C
68 73Right-handed alpha
Helix 29
AD2
C
75 96Right-handed alpha
Helix 30
AD3
C
110 118Right-handed alpha
Helix 31
AD4
C
133 138Right-handed 310
Helix 32
AD5
C
144 154Right-handed alpha
Helix 33
AD6
C
154 165Right-handed alpha
Helix 34
AD7
C
170 176Right-handed alpha
Helix 35
AD8
C
187 201Right-handed alpha
Helix 36
AD9
C
203 218Right-handed alpha
Helix 37
AE1
C
221 237Right-handed alpha
Helix 38
AE2
C
239 254Right-handed alpha
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There are 6 sheets in PDB entry 5Z7R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 11first strand
Strand 2
A
14 19anti-parallel
Strand 3
A
51 56parallel
Strand 4
A
100 104parallel
Strand 5
A
121 125parallel
Strand 6
A
182 183parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
107 109parallel
Strand 3
A
129 131parallel
Strand 4
A
168 169anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
14 19anti-parallel
Strand 3
B
51 56parallel
Strand 4
B
100 104parallel
Strand 5
B
121 125parallel
Strand 6
B
181 183parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
107 109parallel
Strand 3
B
129 131parallel
Strand 4
B
168 169anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 11first strand
Strand 2
C
14 19anti-parallel
Strand 3
C
51 56parallel
Strand 4
C
100 104parallel
Strand 5
C
121 125parallel
Strand 6
C
181 183parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 64first strand
Strand 2
C
107 109parallel
Strand 3
C
129 131parallel
Strand 4
C
168 169anti-parallel
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