Analysis of interatomic Contacts of Structural Units in PDB entry:
5Z8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5Z8N entry

There are 9 chains in PDB entry 5Z8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 15ASP 197
P
ALA 1THR 3
P
GLN 5GLN 5
B
ARG 16ASP 197
Q
ALA 1THR 3
Q
GLN 5ALA 7
C
GLY 15ASP 197
R
ALA 1THR 3
R
GLN 5ALA 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5Z8N. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
113 118Right-handed alpha
Helix 2
AA2
A
173 177Right-handed 310
Helix 3
AA3
A
179 184Right-handed alpha
Helix 4
AA4
A
191 195Right-handed 310
Helix 5
AA5
B
112 119Right-handed alpha
Helix 6
AA6
B
179 186Right-handed alpha
Helix 7
AA7
C
112 119Right-handed alpha
Helix 8
AA8
C
179 186Right-handed alpha
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There are 15 sheets in PDB entry 5Z8N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 19first strand
Strand 2
A
49 58anti-parallel
Strand 3
A
36 39anti-parallel
Strand 4
A
104 112anti-parallel
Strand 5
A
126 134parallel
Strand 6
A
139 141anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 19first strand
Strand 2
A
49 58anti-parallel
Strand 3
A
64 72anti-parallel
Strand 4
A
89 100anti-parallel
Strand 5
A
126 134parallel
Strand 6
A
139 141anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
21 23first strand
Strand 2
A
30 32anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
147 148first strand
Strand 2
A
153 154anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
162 163first strand
Strand 2
A
170 171anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
17 18first strand
Strand 2
B
49 58anti-parallel
Strand 3
B
36 39anti-parallel
Strand 4
B
104 111anti-parallel
Strand 5
B
126 133parallel
Strand 6
B
140 141anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
17 18first strand
Strand 2
B
49 58anti-parallel
Strand 3
B
64 72anti-parallel
Strand 4
B
89 100anti-parallel
Strand 5
B
126 133parallel
Strand 6
B
140 141anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
22 23first strand
Strand 2
B
30 31anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
147 148first strand
Strand 2
B
153 154anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
170 171first strand
Strand 2
B
161 163anti-parallel
Strand 3
Q
3 4anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
17 18first strand
Strand 2
C
49 58anti-parallel
Strand 3
C
36 39anti-parallel
Strand 4
C
104 111anti-parallel
Strand 5
C
126 133parallel
Strand 6
C
140 141anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
17 18first strand
Strand 2
C
49 58anti-parallel
Strand 3
C
64 72anti-parallel
Strand 4
C
89 100anti-parallel
Strand 5
C
126 133parallel
Strand 6
C
140 141anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
22 23first strand
Strand 2
C
30 31anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
147 148first strand
Strand 2
C
153 154anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
170 171first strand
Strand 2
C
161 163anti-parallel
Strand 3
R
3 4anti-parallel
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