Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZDZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZDZ entry

There are 11 chains in PDB entry 5ZDZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 391	ALA 1008
B	VAL 1	CYS 350
C	HIS 385	ASN 1007
D	VAL 1	SER 351
N	GLY 11	LYS 157
F	C 1	T 45
I	A 1	A 16
J	T 1	A 16
G	G 3	T 56
L	C 17	G 46
M	C 17	C 55

There are 71 helices in PDB entry 5ZDZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	395	399	Right-handed 310
Helix 2	AA2	A	400	423	Right-handed alpha
Helix 3	AA3	A	426	442	Right-handed alpha
Helix 4	AA4	A	444	457	Right-handed alpha
Helix 5	AA5	A	463	474	Right-handed alpha
Helix 6	AA6	A	477	493	Right-handed alpha
Helix 7	AA7	A	499	511	Right-handed alpha
Helix 8	AA8	A	558	580	Right-handed alpha
Helix 9	AA9	A	664	683	Right-handed alpha
Helix 10	AB1	A	708	716	Right-handed alpha
Helix 11	AB2	A	733	740	Right-handed alpha
Helix 12	AB3	A	749	763	Right-handed alpha
Helix 13	AB4	A	768	777	Right-handed alpha
Helix 14	AB5	A	792	813	Right-handed alpha
Helix 15	AB6	A	822	842	Right-handed alpha
Helix 16	AB7	A	850	858	Right-handed alpha
Helix 17	AB8	A	859	868	Right-handed alpha
Helix 18	AB9	A	872	895	Right-handed alpha
Helix 19	AC1	A	897	902	Right-handed alpha
Helix 20	AC2	A	902	923	Right-handed alpha
Helix 21	AC3	A	924	929	Right-handed alpha
Helix 22	AC4	A	933	942	Right-handed alpha
Helix 23	AC5	A	942	951	Right-handed alpha
Helix 24	AC6	A	953	957	Right-handed 310
Helix 25	AC7	A	958	975	Right-handed alpha
Helix 26	AC8	A	982	995	Right-handed alpha
Helix 27	AC9	A	996	1002	Right-handed alpha
Helix 28	AD1	A	1003	1005	Right-handed 310
Helix 29	AD2	B	11	15	Right-handed 310
Helix 30	AD3	B	115	119	Right-handed 310
Helix 31	AD4	B	168	172	Right-handed 310
Helix 32	AD5	B	308	314	Right-handed alpha
Helix 33	AD6	C	395	399	Right-handed 310
Helix 34	AD7	C	400	424	Right-handed alpha
Helix 35	AD8	C	426	442	Right-handed alpha
Helix 36	AD9	C	444	456	Right-handed alpha
Helix 37	AE1	C	463	474	Right-handed alpha
Helix 38	AE2	C	477	493	Right-handed alpha
Helix 39	AE3	C	499	511	Right-handed alpha
Helix 40	AE4	C	558	570	Right-handed alpha
Helix 41	AE5	C	570	581	Right-handed alpha
Helix 42	AE6	C	648	652	Right-handed 310
Helix 43	AE7	C	664	684	Right-handed alpha
Helix 44	AE8	C	708	716	Right-handed alpha
Helix 45	AE9	C	733	738	Right-handed alpha
Helix 46	AF1	C	749	763	Right-handed alpha
Helix 47	AF2	C	768	777	Right-handed alpha
Helix 48	AF3	C	792	814	Right-handed alpha
Helix 49	AF4	C	815	818	Right-handed 310
Helix 50	AF5	C	822	842	Right-handed alpha
Helix 51	AF6	C	850	858	Right-handed alpha
Helix 52	AF7	C	859	868	Right-handed alpha
Helix 53	AF8	C	872	895	Right-handed alpha
Helix 54	AF9	C	897	902	Right-handed alpha
Helix 55	AG1	C	902	922	Right-handed alpha
Helix 56	AG2	C	924	929	Right-handed alpha
Helix 57	AG3	C	933	942	Right-handed alpha
Helix 58	AG4	C	942	951	Right-handed alpha
Helix 59	AG5	C	953	957	Right-handed 310
Helix 60	AG6	C	958	975	Right-handed alpha
Helix 61	AG7	C	982	995	Right-handed alpha
Helix 62	AG8	C	996	1004	Right-handed alpha
Helix 63	AG9	D	11	15	Right-handed 310
Helix 64	AH1	D	168	172	Right-handed 310
Helix 65	AH2	D	308	314	Right-handed alpha
Helix 66	AH3	N	14	31	Right-handed alpha
Helix 67	AH4	N	37	50	Right-handed alpha
Helix 68	AH5	N	55	76	Right-handed alpha
Helix 69	AH6	N	100	116	Right-handed alpha
Helix 70	AH7	N	123	136	Right-handed alpha
Helix 71	AH8	N	141	157	Right-handed alpha

There are 18 sheets in PDB entry 5ZDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	520	first strand
Strand 2	A	686	691	anti-parallel
Strand 3	A	694	706	anti-parallel
Strand 4	A	590	602	parallel
Strand 5	A	619	632	anti-parallel
Strand 6	A	653	659	anti-parallel
Strand 7	A	553	557	anti-parallel
Strand 8	A	534	536	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	520	first strand
Strand 2	A	686	691	anti-parallel
Strand 3	A	694	706	anti-parallel
Strand 4	A	590	602	parallel
Strand 5	A	619	632	anti-parallel
Strand 6	A	637	642	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	27	31	anti-parallel
Strand 3	B	45	51	anti-parallel
Strand 4	B	54	59	anti-parallel
Strand 5	B	3	8	parallel
Strand 6	B	343	349	anti-parallel
Strand 7	B	326	332	anti-parallel
Strand 8	B	318	321	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	121	126	parallel
Strand 3	B	107	114	anti-parallel
Strand 4	B	90	94	anti-parallel
Strand 5	B	76	80	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	191	195	parallel
Strand 3	B	182	186	anti-parallel
Strand 4	B	150	156	anti-parallel
Strand 5	B	141	147	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	212	first strand
Strand 2	B	215	222	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	246	251	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	267	first strand
Strand 2	B	270	274	anti-parallel
Strand 3	B	287	292	anti-parallel
Strand 4	B	297	302	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	520	first strand
Strand 2	C	686	691	anti-parallel
Strand 3	C	694	706	anti-parallel
Strand 4	C	591	603	parallel
Strand 5	C	618	632	anti-parallel
Strand 6	C	653	659	anti-parallel
Strand 7	C	553	556	anti-parallel
Strand 8	C	535	536	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	520	first strand
Strand 2	C	686	691	anti-parallel
Strand 3	C	694	706	anti-parallel
Strand 4	C	591	603	parallel
Strand 5	C	618	632	anti-parallel
Strand 6	C	637	642	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	54	59	parallel
Strand 3	D	45	51	anti-parallel
Strand 4	D	27	31	anti-parallel
Strand 5	D	20	24	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	119	127	parallel
Strand 3	D	107	116	anti-parallel
Strand 4	D	90	94	anti-parallel
Strand 5	D	76	80	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	191	195	parallel
Strand 3	D	182	186	anti-parallel
Strand 4	D	150	156	anti-parallel
Strand 5	D	141	147	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	175	177	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	212	first strand
Strand 2	D	215	219	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	239	first strand
Strand 2	D	246	252	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	266	first strand
Strand 2	D	270	274	anti-parallel
Strand 3	D	287	292	anti-parallel
Strand 4	D	297	302	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	321	first strand
Strand 2	D	327	332	anti-parallel
Strand 3	D	343	346	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZDZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZDZ