Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZF6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZF6 entry

There are 2 chains in PDB entry 5ZF6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 46	ILE 667
B	ALA 46	ILE 667

There are 33 helices in PDB entry 5ZF6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	125	139	Right-handed alpha
Helix 2	AA2	A	140	142	Right-handed 310
Helix 3	AA3	A	164	180	Right-handed alpha
Helix 4	AA4	A	205	211	Right-handed alpha
Helix 5	AA5	A	237	267	Right-handed alpha
Helix 6	AA6	A	280	301	Right-handed alpha
Helix 7	AA7	A	305	328	Right-handed alpha
Helix 8	AA8	A	332	356	Right-handed alpha
Helix 9	AA9	A	450	459	Right-handed alpha
Helix 10	AB1	A	460	462	Right-handed 310
Helix 11	AB2	A	482	498	Right-handed alpha
Helix 12	AB3	A	534	540	Right-handed alpha
Helix 13	AB4	A	568	593	Right-handed alpha
Helix 14	AB5	A	613	622	Right-handed alpha
Helix 15	AB6	A	625	636	Right-handed alpha
Helix 16	AB7	A	653	666	Right-handed alpha
Helix 17	AB8	B	125	139	Right-handed alpha
Helix 18	AB9	B	140	142	Right-handed 310
Helix 19	AC1	B	164	180	Right-handed alpha
Helix 20	AC2	B	207	212	Right-handed 310
Helix 21	AC3	B	222	224	Right-handed 310
Helix 22	AC4	B	237	267	Right-handed alpha
Helix 23	AC5	B	280	299	Right-handed alpha
Helix 24	AC6	B	305	328	Right-handed alpha
Helix 25	AC7	B	332	356	Right-handed alpha
Helix 26	AC8	B	450	459	Right-handed alpha
Helix 27	AC9	B	460	462	Right-handed 310
Helix 28	AD1	B	482	499	Right-handed alpha
Helix 29	AD2	B	534	540	Right-handed alpha
Helix 30	AD3	B	567	593	Right-handed alpha
Helix 31	AD4	B	622	624	Right-handed 310
Helix 32	AD5	B	625	636	Right-handed alpha
Helix 33	AD6	B	653	666	Right-handed alpha

There are 9 sheets in PDB entry 5ZF6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	55	59	anti-parallel
Strand 3	A	69	75	anti-parallel
Strand 4	A	78	86	anti-parallel
Strand 5	A	150	158	anti-parallel
Strand 6	A	98	102	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	202	first strand
Strand 2	A	189	196	anti-parallel
Strand 3	A	214	221	anti-parallel
Strand 4	A	225	236	anti-parallel
Strand 5	A	554	561	anti-parallel
Strand 6	A	543	549	anti-parallel
Strand 7	A	507	517	anti-parallel
Strand 8	A	524	531	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	202	first strand
Strand 2	A	189	196	anti-parallel
Strand 3	A	214	221	anti-parallel
Strand 4	A	225	236	anti-parallel
Strand 5	A	566	567	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	374	first strand
Strand 2	A	382	388	anti-parallel
Strand 3	A	391	400	anti-parallel
Strand 4	A	469	478	anti-parallel
Strand 5	A	423	426	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	611	first strand
Strand 2	A	646	651	anti-parallel
Strand 3	A	638	641	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	55	60	anti-parallel
Strand 3	B	69	75	anti-parallel
Strand 4	B	78	86	anti-parallel
Strand 5	B	150	158	anti-parallel
Strand 6	B	98	101	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	189	196	anti-parallel
Strand 3	B	214	221	anti-parallel
Strand 4	B	225	236	anti-parallel
Strand 5	B	554	561	anti-parallel
Strand 6	B	543	549	anti-parallel
Strand 7	B	507	516	anti-parallel
Strand 8	B	526	531	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	374	first strand
Strand 2	B	382	388	anti-parallel
Strand 3	B	391	400	anti-parallel
Strand 4	B	469	478	anti-parallel
Strand 5	B	423	428	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	610	first strand
Strand 2	B	647	651	anti-parallel
Strand 3	B	638	640	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZF6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZF6