Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZR1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZR1 entry

There are 8 chains in PDB entry 5ZR1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 355	LEU 914
B	ALA 236	LEU 620
C	PHE 15	ILE 616
D	ASP 46	LEU 529
E	MET 1	GLU 479
F	SER 271	ALA 430
G	T 1	T 41
H	A 32	A 72

There are130 helices in PDB entry 5ZR1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	374	378	Right-handed 310
Helix 2	AA2	A	404	408	Right-handed 310
Helix 3	AA3	A	421	430	Right-handed alpha
Helix 4	AA4	A	455	469	Right-handed alpha
Helix 5	AA5	A	484	502	Right-handed alpha
Helix 6	AA6	A	516	518	Right-handed 310
Helix 7	AA7	A	522	534	Right-handed alpha
Helix 8	AA8	A	538	552	Right-handed alpha
Helix 9	AA9	A	578	585	Right-handed alpha
Helix 10	AB1	A	586	588	Right-handed 310
Helix 11	AB2	A	603	609	Right-handed alpha
Helix 12	AB3	A	610	618	Right-handed alpha
Helix 13	AB4	A	628	637	Right-handed alpha
Helix 14	AB5	A	638	641	Right-handed 310
Helix 15	AB6	A	685	698	Right-handed alpha
Helix 16	AB7	A	702	726	Right-handed alpha
Helix 17	AB8	A	774	787	Right-handed alpha
Helix 18	AB9	A	789	795	Right-handed alpha
Helix 19	AC1	A	798	815	Right-handed alpha
Helix 20	AC2	A	822	836	Right-handed alpha
Helix 21	AC3	A	839	846	Right-handed alpha
Helix 22	AC4	A	846	851	Right-handed alpha
Helix 23	AC5	A	865	876	Right-handed alpha
Helix 24	AC6	A	898	906	Right-handed alpha
Helix 25	AC7	A	908	914	Right-handed alpha
Helix 26	AC8	B	242	250	Right-handed alpha
Helix 27	AC9	B	270	285	Right-handed alpha
Helix 28	AD1	B	286	297	Right-handed alpha
Helix 29	AD2	B	300	309	Right-handed alpha
Helix 30	AD3	B	322	332	Right-handed alpha
Helix 31	AD4	B	333	342	Right-handed alpha
Helix 32	AD5	B	371	384	Right-handed alpha
Helix 33	AD6	B	398	412	Right-handed alpha
Helix 34	AD7	B	434	446	Right-handed alpha
Helix 35	AD8	B	460	465	Right-handed 310
Helix 36	AD9	B	466	474	Right-handed alpha
Helix 37	AE1	B	506	515	Right-handed alpha
Helix 38	AE2	B	518	540	Right-handed alpha
Helix 39	AE3	B	549	553	Right-handed 310
Helix 40	AE4	B	556	566	Right-handed alpha
Helix 41	AE5	B	571	584	Right-handed alpha
Helix 42	AE6	B	605	616	Right-handed alpha
Helix 43	AE7	C	50	92	Right-handed alpha
Helix 44	AE8	C	138	156	Right-handed alpha
Helix 45	AE9	C	185	190	Right-handed alpha
Helix 46	AF1	C	191	196	Right-handed alpha
Helix 47	AF2	C	212	225	Right-handed alpha
Helix 48	AF3	C	252	257	Right-handed alpha
Helix 49	AF4	C	271	275	Right-handed 310
Helix 50	AF5	C	276	288	Right-handed alpha
Helix 51	AF6	C	295	306	Right-handed alpha
Helix 52	AF7	C	313	332	Right-handed alpha
Helix 53	AF8	C	333	346	Right-handed 310
Helix 54	AF9	C	347	355	Right-handed alpha
Helix 55	AG1	C	357	371	Right-handed alpha
Helix 56	AG2	C	374	381	Right-handed alpha
Helix 57	AG3	C	386	393	Right-handed alpha
Helix 58	AG4	C	401	416	Right-handed alpha
Helix 59	AG5	C	424	434	Right-handed alpha
Helix 60	AG6	C	436	441	Right-handed alpha
Helix 61	AG7	C	474	479	Right-handed alpha
Helix 62	AG8	C	482	493	Right-handed alpha
Helix 63	AG9	C	510	515	Right-handed alpha
Helix 64	AH1	C	519	530	Right-handed alpha
Helix 65	AH2	C	537	546	Right-handed alpha
Helix 66	AH3	C	549	559	Right-handed alpha
Helix 67	AH4	C	563	572	Right-handed alpha
Helix 68	AH5	C	574	585	Right-handed alpha
Helix 69	AH6	C	586	594	Right-handed alpha
Helix 70	AH7	D	47	59	Right-handed alpha
Helix 71	AH8	D	72	74	Right-handed 310
Helix 72	AH9	D	75	88	Right-handed alpha
Helix 73	AI1	D	107	121	Right-handed alpha
Helix 74	AI2	D	140	158	Right-handed alpha
Helix 75	AI3	D	176	189	Right-handed alpha
Helix 76	AI4	D	219	222	Right-handed 310
Helix 77	AI5	D	229	241	Right-handed alpha
Helix 78	AI6	D	261	268	Right-handed alpha
Helix 79	AI7	D	280	293	Right-handed alpha
Helix 80	AI8	D	301	315	Right-handed alpha
Helix 81	AI9	D	318	331	Right-handed alpha
Helix 82	AJ1	D	333	347	Right-handed alpha
Helix 83	AJ2	D	350	361	Right-handed alpha
Helix 84	AJ3	D	361	371	Right-handed alpha
Helix 85	AJ4	D	376	381	Right-handed alpha
Helix 86	AJ5	D	384	401	Right-handed alpha
Helix 87	AJ6	D	407	426	Right-handed alpha
Helix 88	AJ7	D	452	466	Right-handed alpha
Helix 89	AJ8	D	480	490	Right-handed alpha
Helix 90	AJ9	D	492	497	Right-handed alpha
Helix 91	AK1	D	498	502	Right-handed 310
Helix 92	AK2	D	509	517	Right-handed alpha
Helix 93	AK3	D	523	527	Right-handed 310
Helix 94	AK4	E	11	22	Right-handed alpha
Helix 95	AK5	E	25	29	Right-handed 310
Helix 96	AK6	E	44	53	Right-handed alpha
Helix 97	AK7	E	69	89	Right-handed alpha
Helix 98	AK8	E	98	102	Right-handed 310
Helix 99	AK9	E	104	117	Right-handed alpha
Helix 100	AL1	E	118	120	Right-handed 310
Helix 101	AL2	E	145	150	Right-handed alpha
Helix 102	AL3	E	151	153	Right-handed 310
Helix 103	AL4	E	175	183	Right-handed 310
Helix 104	AL5	E	193	206	Right-handed alpha
Helix 105	AL6	E	207	212	Right-handed alpha
Helix 106	AL7	E	212	222	Right-handed alpha
Helix 107	AL8	E	228	252	Right-handed alpha
Helix 108	AL9	E	255	264	Right-handed alpha
Helix 109	AM1	E	265	271	Right-handed alpha
Helix 110	AM2	E	274	279	Right-handed alpha
Helix 111	AM3	E	280	287	Right-handed alpha
Helix 112	AM4	E	288	292	Right-handed 310
Helix 113	AM5	E	325	339	Right-handed alpha
Helix 114	AM6	E	342	344	Right-handed 310
Helix 115	AM7	E	345	351	Right-handed alpha
Helix 116	AM8	E	372	376	Right-handed 310
Helix 117	AM9	E	382	394	Right-handed alpha
Helix 118	AN1	E	403	408	Right-handed alpha
Helix 119	AN2	E	417	430	Right-handed alpha
Helix 120	AN3	E	455	466	Right-handed alpha
Helix 121	AN4	E	470	476	Right-handed alpha
Helix 122	AN5	F	281	291	Right-handed alpha
Helix 123	AN6	F	295	310	Right-handed alpha
Helix 124	AN7	F	315	332	Right-handed alpha
Helix 125	AN8	F	332	339	Right-handed alpha
Helix 126	AN9	F	340	354	Right-handed alpha
Helix 127	AO1	F	359	373	Right-handed alpha
Helix 128	AO2	F	376	386	Right-handed alpha
Helix 129	AO3	F	393	403	Right-handed alpha
Helix 130	AO4	F	414	430	Right-handed alpha

There are 13 sheets in PDB entry 5ZR1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	412	first strand
Strand 2	D	208	209	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	514	first strand
Strand 2	A	560	566	parallel
Strand 3	A	593	598	parallel
Strand 4	A	473	479	parallel
Strand 5	A	620	624	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	657	659	first strand
Strand 2	A	646	651	anti-parallel
Strand 3	A	677	684	anti-parallel
Strand 4	A	770	773	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	820	821	first strand
Strand 2	A	891	894	anti-parallel
Strand 3	A	879	881	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	479	first strand
Strand 2	B	313	317	parallel
Strand 3	B	450	455	parallel
Strand 4	B	420	425	parallel
Strand 5	B	360	364	parallel
Strand 6	C	23	25	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	555	first strand
Strand 2	B	598	601	anti-parallel
Strand 3	B	589	592	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	131	first strand
Strand 2	C	199	205	parallel
Strand 3	C	234	238	parallel
Strand 4	C	103	108	parallel
Strand 5	C	263	267	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	293	294	first strand
Strand 2	C	467	468	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	607	610	anti-parallel
Strand 3	C	597	598	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	133	first strand
Strand 2	D	211	217	parallel
Strand 3	D	245	251	parallel
Strand 4	D	97	101	parallel
Strand 5	D	272	274	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	469	471	first strand
Strand 2	D	504	506	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	62	first strand
Strand 2	E	126	133	parallel
Strand 3	E	162	170	parallel
Strand 4	E	32	37	parallel
Strand 5	E	186	189	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	433	435	first strand
Strand 2	E	450	452	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZR1

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZR1