Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ZVR entry

There is 1 chain in PDB entry 5ZVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1LEU 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5ZVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 24Right-handed alpha
Helix 2
AA2
A
58 65Right-handed alpha
Helix 3
AA3
A
65 71Right-handed alpha
Helix 4
AA4
A
71 79Right-handed alpha
Helix 5
AA5
A
101 114Right-handed alpha
Helix 6
AA6
A
150 159Right-handed alpha
Helix 7
AA7
A
160 164Right-handed 310
Helix 8
AA8
A
165 174Right-handed alpha
Helix 9
AA9
A
176 189Right-handed alpha
Helix 10
AB1
A
191 209Right-handed alpha
Helix 11
AB2
A
213 222Right-handed alpha
Helix 12
AB3
A
227 234Right-handed 310
Helix 13
AB4
A
283 290Right-handed alpha
Helix 14
AB5
A
297 301Right-handed 310
Helix 15
AB6
A
371 374Right-handed 310
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There are 6 sheets in PDB entry 5ZVR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 3first strand
Strand 2
A
366 369anti-parallel
Strand 3
A
341 354anti-parallel
Strand 4
A
376 388anti-parallel
Strand 5
A
333 335anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
311 313anti-parallel
Strand 3
A
322 327anti-parallel
Strand 4
A
376 388anti-parallel
Strand 5
A
341 354anti-parallel
Strand 6
A
357 361anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
83 90anti-parallel
Strand 4
A
255 267anti-parallel
Strand 5
A
142 148anti-parallel
Strand 6
A
236 241anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
83 90anti-parallel
Strand 4
A
255 267anti-parallel
Strand 5
A
134 138anti-parallel
Strand 6
A
246 249anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
55 57anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
273 274anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il