Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZYA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ZYA entry

There are 4 chains in PDB entry 5ZYA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 16	ASP 81
C	GLU 490	LEU 1304
D	ASP 7	LEU 91
A	ASP 0	ASP 1222

There are 67 helices in PDB entry 5ZYA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	27	46	Right-handed alpha
Helix 2	AA2	B	48	57	Right-handed alpha
Helix 3	AA3	B	60	71	Right-handed alpha
Helix 4	AA4	C	491	497	Right-handed alpha
Helix 5	AA5	C	499	506	Right-handed alpha
Helix 6	AA6	C	508	522	Right-handed alpha
Helix 7	AA7	C	522	527	Right-handed alpha
Helix 8	AA8	C	528	541	Right-handed alpha
Helix 9	AA9	C	545	560	Right-handed alpha
Helix 10	AB1	C	570	578	Right-handed alpha
Helix 11	AB2	C	586	604	Right-handed alpha
Helix 12	AB3	C	605	613	Right-handed alpha
Helix 13	AB4	C	621	640	Right-handed alpha
Helix 14	AB5	C	644	653	Right-handed alpha
Helix 15	AB6	C	657	676	Right-handed alpha
Helix 16	AB7	C	682	691	Right-handed alpha
Helix 17	AB8	C	692	694	Right-handed 310
Helix 18	AB9	C	698	717	Right-handed alpha
Helix 19	AC1	C	727	738	Right-handed alpha
Helix 20	AC2	C	740	754	Right-handed alpha
Helix 21	AC3	C	758	776	Right-handed alpha
Helix 22	AC4	C	781	796	Right-handed alpha
Helix 23	AC5	C	802	810	Right-handed alpha
Helix 24	AC6	C	810	818	Right-handed alpha
Helix 25	AC7	C	826	845	Right-handed alpha
Helix 26	AC8	C	846	851	Right-handed alpha
Helix 27	AC9	C	852	853	Right-handed 310
Helix 28	AD1	C	854	858	Right-handed 310
Helix 29	AD2	C	861	879	Right-handed alpha
Helix 30	AD3	C	888	902	Right-handed alpha
Helix 31	AD4	C	910	922	Right-handed alpha
Helix 32	AD5	C	923	925	Right-handed 310
Helix 33	AD6	C	928	941	Right-handed alpha
Helix 34	AD7	C	942	944	Right-handed 310
Helix 35	AD8	C	945	957	Right-handed alpha
Helix 36	AD9	C	958	964	Right-handed alpha
Helix 37	AE1	C	969	981	Right-handed alpha
Helix 38	AE2	C	986	1004	Right-handed alpha
Helix 39	AE3	C	1012	1021	Right-handed alpha
Helix 40	AE4	C	1022	1026	Right-handed 310
Helix 41	AE5	C	1028	1046	Right-handed alpha
Helix 42	AE6	C	1051	1064	Right-handed alpha
Helix 43	AE7	C	1065	1068	Right-handed 310
Helix 44	AE8	C	1070	1088	Right-handed alpha
Helix 45	AE9	C	1109	1123	Right-handed alpha
Helix 46	AF1	C	1127	1137	Right-handed alpha
Helix 47	AF2	C	1143	1159	Right-handed alpha
Helix 48	AF3	C	1160	1163	Right-handed 310
Helix 49	AF4	C	1168	1178	Right-handed alpha
Helix 50	AF5	C	1181	1199	Right-handed alpha
Helix 51	AF6	C	1205	1216	Right-handed alpha
Helix 52	AF7	C	1217	1219	Right-handed 310
Helix 53	AF8	C	1223	1242	Right-handed alpha
Helix 54	AF9	C	1242	1249	Right-handed alpha
Helix 55	AG1	C	1258	1275	Right-handed alpha
Helix 56	AG2	C	1276	1281	Right-handed 310
Helix 57	AG3	C	1297	1301	Right-handed 310
Helix 58	AG4	D	23	27	Right-handed 310
Helix 59	AG5	D	73	78	Right-handed alpha
Helix 60	AG6	A	190	194	Right-handed 310
Helix 61	AG7	A	429	432	Right-handed 310
Helix 62	AG8	A	808	825	Right-handed alpha
Helix 63	AG9	A	838	843	Right-handed alpha
Helix 64	AH1	A	1134	1152	Right-handed alpha
Helix 65	AH2	A	1160	1165	Right-handed alpha
Helix 66	AH3	A	1186	1195	Right-handed alpha
Helix 67	AH4	A	1200	1215	Right-handed alpha

There are 30 sheets in PDB entry 5ZYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	10	first strand
Strand 2	D	88	89	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	19	first strand
Strand 2	D	44	45	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	42	first strand
Strand 2	D	70	72	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	1173	1174	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	9	first strand
Strand 2	A	1126	1128	anti-parallel
Strand 3	A	1116	1121	anti-parallel
Strand 4	A	1101	1107	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	29	33	anti-parallel
Strand 3	A	37	40	anti-parallel
Strand 4	A	54	57	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	78	81	anti-parallel
Strand 3	A	86	90	anti-parallel
Strand 4	A	105	106	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	98	99	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	123	first strand
Strand 2	A	129	133	anti-parallel
Strand 3	A	139	143	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	167	first strand
Strand 2	A	181	188	anti-parallel
Strand 3	A	172	173	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	167	first strand
Strand 2	A	181	188	anti-parallel
Strand 3	A	207	214	anti-parallel
Strand 4	A	219	222	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	237	first strand
Strand 2	A	248	252	anti-parallel
Strand 3	A	255	259	anti-parallel
Strand 4	A	268	270	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	386	387	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	299	300	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	310	311	anti-parallel
Strand 3	A	329	331	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	317	first strand
Strand 2	A	322	326	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	342	first strand
Strand 2	A	346	351	anti-parallel
Strand 3	A	356	361	anti-parallel
Strand 4	A	395	401	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	413	first strand
Strand 2	A	422	427	anti-parallel
Strand 3	A	434	439	anti-parallel
Strand 4	A	775	780	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	449	first strand
Strand 2	A	763	767	anti-parallel
Strand 3	A	754	756	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	477	first strand
Strand 2	A	482	486	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	510	first strand
Strand 2	A	515	520	anti-parallel
Strand 3	A	523	528	anti-parallel
Strand 4	A	533	537	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	549	first strand
Strand 2	A	553	557	anti-parallel
Strand 3	A	563	568	anti-parallel
Strand 4	A	574	576	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	589	first strand
Strand 2	A	606	609	anti-parallel
Strand 3	A	613	617	anti-parallel
Strand 4	A	627	632	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	640	643	first strand
Strand 2	A	664	668	anti-parallel
Strand 3	A	673	678	anti-parallel
Strand 4	A	689	690	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	700	703	first strand
Strand 2	A	712	715	anti-parallel
Strand 3	A	719	723	anti-parallel
Strand 4	A	730	733	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	785	790	first strand
Strand 2	A	797	804	anti-parallel
Strand 3	A	862	869	anti-parallel
Strand 4	A	876	881	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	886	891	first strand
Strand 2	A	907	911	anti-parallel
Strand 3	A	922	925	anti-parallel
Strand 4	A	943	945	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	953	955	first strand
Strand 2	A	958	963	anti-parallel
Strand 3	A	966	969	anti-parallel
Strand 4	A	981	982	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	990	995	first strand
Strand 2	A	999	1004	anti-parallel
Strand 3	A	1009	1015	anti-parallel
Strand 4	A	1020	1025	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1037	1038	first strand
Strand 2	A	1043	1045	anti-parallel
Strand 3	A	1052	1057	anti-parallel
Strand 4	A	1091	1096	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ZYA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ZYA