Analysis of interatomic Contacts of Structural Units in PDB entry:
6A08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6A08 entry

There is 1 chain in PDB entry 6A08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2VAL 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6A08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 17Right-handed alpha
Helix 2
AA2
A
18 27Right-handed alpha
Helix 3
AA3
A
32 44Right-handed alpha
Helix 4
AA4
A
80 84Right-handed 310
Helix 5
AA5
A
87 100Right-handed alpha
Helix 6
AA6
A
112 119Right-handed alpha
Helix 7
AA7
A
132 146Right-handed alpha
Helix 8
AA8
A
163 170Right-handed alpha
Helix 9
AA9
A
210 221Right-handed alpha
Helix 10
AB1
A
232 242Right-handed alpha
Helix 11
AB2
A
251 255Right-handed 310
Helix 12
AB3
A
262 275Right-handed alpha
Helix 13
AB4
A
288 298Right-handed alpha
Helix 14
AB5
A
306 339Right-handed alpha
Helix 15
AB6
A
343 349Right-handed alpha
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There are 3 sheets in PDB entry 6A08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
351 354anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
67 69anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 75first strand
Strand 2
A
302 305parallel
Strand 3
A
279 282parallel
Strand 4
A
246 249parallel
Strand 5
A
225 230parallel
Strand 6
A
151 154parallel
Strand 7
A
124 127parallel
Strand 8
A
104 105parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il