Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 6A9P entry
There are 8 chains in PDB entry 6A9P
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
THR 110 | GLN 212 |
B
|
THR 110 | GLN 212 |
C
|
HIS 108 | LEU 211 |
D
|
MET 109 | GLN 212 |
E
|
THR 110 | LEU 211 |
F
|
MET 109 | VAL 208 |
G
|
THR 110 | GLN 212 |
H
|
HIS 108 | VAL 208 |
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There are 9
helices in PDB entry 6A9P. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
AA1 | A
| 110 |
211 | Right-handed alpha |
Helix 2 |
AA2 | B
| 111 |
211 | Right-handed alpha |
Helix 3 |
AA3 | C
| 109 |
168 | Right-handed alpha |
Helix 4 |
AA4 | C
| 168 |
210 | Right-handed alpha |
Helix 5 |
AA5 | D
| 110 |
211 | Right-handed alpha |
Helix 6 |
AA6 | E
| 111 |
211 | Right-handed alpha |
Helix 7 |
AA7 | F
| 110 |
208 | Right-handed alpha |
Helix 8 |
AA8 | G
| 111 |
211 | Right-handed alpha |
Helix 9 |
AA9 | H
| 109 |
208 | Right-handed alpha |
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There are no sheets in PDB entry
6A9P
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il